RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 UNC80Q8N2C7 3258 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 LOC102724159A0A0B4J2E5 919 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 KLRF2D3W0D1 207 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 RAG1P15918 1043 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 ACLYP53396 1101 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 PWP2Q15269 919 aaKnown RBP21.56■■□□□ 1.04
HOXD3-204ENST00000459979 CDC37Q16543 378 aaPredicted RBP21.56■■□□□ 1.04
HOXD3-204ENST00000459979 TMTC2Q8N394 836 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 STAG2Q8N3U4 1231 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 MYLIPQ8WY64 445 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 MTMR8Q96EF0 704 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 MAP3K14Q99558 947 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 TTYH1Q9H313 450 aaPredicted RBP21.56■■□□□ 1.04
HOXD3-204ENST00000459979 LY9Q9HBG7 655 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.56■■□□□ 1.04
HOXD3-204ENST00000459979 LCTP09848 1927 aa21.56■■□□□ 1.04
HOXD3-204ENST00000459979 ASB14A6NK59 587 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 NFIBO00712 420 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 KIAA0355O15063 1070 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 ADCY6O43306 1168 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 PRC1O43663 620 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 NSMFQ6X4W1 530 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 ARMCX2Q7L311 632 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 MORC4Q8TE76 937 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 RNPC3Q96LT9 517 aaKnown RBP21.55■■□□□ 1.04
HOXD3-204ENST00000459979 KATNBL1Q9H079 304 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 STARD7Q9NQZ5 370 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 TMEM39AQ9NV64 488 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 FAM184BQ9ULE4 1060 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 ASTN1O14525 1302 aa21.55■■□□□ 1.04
HOXD3-204ENST00000459979 CUL9Q8IWT3 2517 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 LIFRP42702 1097 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 SMAD3P84022 425 aaKnown RBP21.54■■□□□ 1.04
HOXD3-204ENST00000459979 FAAP100Q0VG06 881 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 ACVR2BQ13705 512 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 BAATQ14032 418 aaPredicted RBP21.54■■□□□ 1.04
HOXD3-204ENST00000459979 KCNA10Q16322 511 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 QRICH1Q2TAL8 776 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 CATIPQ7Z7H3 387 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 CCDC144CPQ8IYA2 1237 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 KLHDC9Q8NEP7 349 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 KCNB2Q92953 911 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 RIOX1Q9H6W3 641 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 ABCB11O95342 1321 aa21.54■■□□□ 1.04
HOXD3-204ENST00000459979 BAZ2BQ9UIF8 2168 aaKnown RBP21.53■■□□□ 1.04
HOXD3-204ENST00000459979 SH2B2O14492 632 aaPredicted RBP21.53■■□□□ 1.04
HOXD3-204ENST00000459979 COL9A3Q14050 684 aaPredicted RBP21.53■■□□□ 1.04
HOXD3-204ENST00000459979 MAFAQ8NHW3 353 aaPredicted RBP21.53■■□□□ 1.04
HOXD3-204ENST00000459979 TSEN34Q9BSV6 310 aaKnown RBP21.53■■□□□ 1.04
HOXD3-204ENST00000459979 ADD3Q9UEY8 706 aaKnown RBP21.53■■□□□ 1.04
HOXD3-204ENST00000459979 EPB41L2O43491 1005 aaKnown RBP21.52■■□□□ 1.04
HOXD3-204ENST00000459979 DDAH1O94760 285 aa21.52■■□□□ 1.04
HOXD3-204ENST00000459979 C6orf222P0C671 652 aaPredicted RBP21.52■■□□□ 1.04
HOXD3-204ENST00000459979 FPGSQ05932 587 aa21.52■■□□□ 1.04
HOXD3-204ENST00000459979 KRT32Q14532 448 aa21.52■■□□□ 1.04
HOXD3-204ENST00000459979 CCSAPQ6IQ19 270 aaPredicted RBP21.52■■□□□ 1.04
HOXD3-204ENST00000459979 RNF207Q6ZRF8 634 aa21.52■■□□□ 1.04
HOXD3-204ENST00000459979 RASEFQ8IZ41 740 aa21.52■■□□□ 1.04
HOXD3-204ENST00000459979 NEK1Q96PY6 1258 aa21.52■■□□□ 1.04
HOXD3-204ENST00000459979 VAT1LQ9HCJ6 419 aa21.52■■□□□ 1.04
HOXD3-204ENST00000459979 EYSQ5T1H1 3165 aa21.52■■□□□ 1.03
HOXD3-204ENST00000459979 DCDC2CA8MYV0 355 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 ZBTB5O15062 677 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 DHX16O60231 1041 aaKnown RBP21.51■■□□□ 1.03
HOXD3-204ENST00000459979 DUSP11O75319 330 aaKnown RBP21.51■■□□□ 1.03
HOXD3-204ENST00000459979 SMARCA1P28370 1054 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 RPS6P62753 249 aaKnown RBP21.51■■□□□ 1.03
HOXD3-204ENST00000459979 SLC35G1Q2M3R5 365 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 CCDC144BQ3MJ40 725 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 ANKRD33Q7Z3H0 272 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 FBXO11Q86XK2 927 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 ZNF654Q8IZM8 581 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 NUP133Q8WUM0 1156 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 AMNQ9BXJ7 453 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 GPHNQ9NQX3 736 aaPredicted RBP21.51■■□□□ 1.03
HOXD3-204ENST00000459979 LRRC37A2A6NM11 1700 aa21.51■■□□□ 1.03
HOXD3-204ENST00000459979 PTPDC1A2A3K4 754 aa21.5■■□□□ 1.03
HOXD3-204ENST00000459979 MOXD2PA6NHM9 499 aa21.5■■□□□ 1.03
HOXD3-204ENST00000459979 REC8O95072 547 aa21.5■■□□□ 1.03
HOXD3-204ENST00000459979 EXOSC10Q01780 885 aaKnown RBP21.5■■□□□ 1.03
HOXD3-204ENST00000459979 USH1GQ495M9 461 aa21.5■■□□□ 1.03
HOXD3-204ENST00000459979 SGMS1Q86VZ5 419 aa21.5■■□□□ 1.03
HOXD3-204ENST00000459979 DNERQ8NFT8 737 aa21.5■■□□□ 1.03
HOXD3-204ENST00000459979 MRPL11Q9Y3B7 192 aaKnown RBP21.5■■□□□ 1.03
HOXD3-204ENST00000459979 CYTH3O43739 400 aa21.49■■□□□ 1.03
HOXD3-204ENST00000459979 ASGR1P07306 291 aa21.49■■□□□ 1.03
HOXD3-204ENST00000459979 HSPA4P34932 840 aa21.49■■□□□ 1.03
HOXD3-204ENST00000459979 GHRHRQ02643 423 aa21.49■■□□□ 1.03
HOXD3-204ENST00000459979 TRAF1Q13077 416 aa21.49■■□□□ 1.03
HOXD3-204ENST00000459979 SLC30A10Q6XR72 485 aa21.49■■□□□ 1.03
HOXD3-204ENST00000459979 DHX32Q7L7V1 743 aaKnown RBP21.49■■□□□ 1.03
HOXD3-204ENST00000459979 MCF2L2Q86YR7 1114 aa21.49■■□□□ 1.03
HOXD3-204ENST00000459979 VTI1AQ96AJ9 217 aa21.49■■□□□ 1.03
HOXD3-204ENST00000459979 TOX2Q96NM4 488 aa21.49■■□□□ 1.03
HOXD3-204ENST00000459979 PURBQ96QR8 312 aaKnown RBP21.49■■□□□ 1.03
HOXD3-204ENST00000459979 CCDC69A6NI79 296 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 HMGB1P09429 215 aaKnown RBP21.48■■□□□ 1.03
HOXD3-204ENST00000459979 CALM1P0DP23 149 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 CALM2P0DP24 149 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 CALM3P0DP25 149 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms