RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 EEPD1Q7L9B9 569 aa17.12■□□□□ 0.33
HMGN1-208ENST00000443046 PURBQ96QR8 312 aaKnown RBP17.12■□□□□ 0.33
HMGN1-208ENST00000443046 LRFN3Q9BTN0 628 aa17.12■□□□□ 0.33
HMGN1-208ENST00000443046 EPHX3Q9H6B9 360 aa17.12■□□□□ 0.33
HMGN1-208ENST00000443046 TNKSO95271 1327 aa17.12■□□□□ 0.33
HMGN1-208ENST00000443046 TET1Q8NFU7 2136 aa17.12■□□□□ 0.33
HMGN1-208ENST00000443046 SMARCA5O60264 1052 aaPredicted RBP17.11■□□□□ 0.33
HMGN1-208ENST00000443046 ARHGEF15O94989 841 aa17.11■□□□□ 0.33
HMGN1-208ENST00000443046 ZFYP08048 801 aaPredicted RBP17.11■□□□□ 0.33
HMGN1-208ENST00000443046 RFC2P35250 354 aa17.11■□□□□ 0.33
HMGN1-208ENST00000443046 HNRNPUQ00839 825 aaKnown RBP eCLIP17.11■□□□□ 0.33
HMGN1-208ENST00000443046 TAP1Q03518 808 aa17.11■□□□□ 0.33
HMGN1-208ENST00000443046 RCSD1Q6JBY9 416 aa17.11■□□□□ 0.33
HMGN1-208ENST00000443046 SLC9A7Q96T83 725 aa17.11■□□□□ 0.33
HMGN1-208ENST00000443046 POLR3EQ9NVU0 708 aa17.11■□□□□ 0.33
HMGN1-208ENST00000443046 PRR12Q9ULL5 1215 aa17.11■□□□□ 0.33
HMGN1-208ENST00000443046 WDFY4Q6ZS81 3184 aa17.11■□□□□ 0.33
HMGN1-208ENST00000443046 LOC102724159A0A0B4J2E5 919 aa17.1■□□□□ 0.33
HMGN1-208ENST00000443046 PITPNM1O00562 1244 aa17.1■□□□□ 0.33
HMGN1-208ENST00000443046 GTPBP6O43824 516 aaPredicted RBP17.1■□□□□ 0.33
HMGN1-208ENST00000443046 NOVP48745 357 aa17.1■□□□□ 0.33
HMGN1-208ENST00000443046 SNAP25P60880 206 aa17.1■□□□□ 0.33
HMGN1-208ENST00000443046 PDE4BQ07343 736 aa17.1■□□□□ 0.33
HMGN1-208ENST00000443046 PWP2Q15269 919 aaKnown RBP17.1■□□□□ 0.33
HMGN1-208ENST00000443046 KRT40Q6A162 431 aa17.1■□□□□ 0.33
HMGN1-208ENST00000443046 DEFB128Q7Z7B8 93 aa17.1■□□□□ 0.33
HMGN1-208ENST00000443046 CERS4Q9HA82 394 aa17.1■□□□□ 0.33
HMGN1-208ENST00000443046 TANC1Q9C0D5 1861 aa17.1■□□□□ 0.33
HMGN1-208ENST00000443046 LPXNO60711 386 aa17.09■□□□□ 0.33
HMGN1-208ENST00000443046 APPP05067 770 aa17.09■□□□□ 0.33
HMGN1-208ENST00000443046 SKIV2LQ15477 1246 aaKnown RBP17.09■□□□□ 0.33
HMGN1-208ENST00000443046 KCTD1Q719H9 257 aa17.09■□□□□ 0.33
HMGN1-208ENST00000443046 MTG1Q9BT17 334 aaPredicted RBP17.09■□□□□ 0.33
HMGN1-208ENST00000443046 WDR11Q9BZH6 1224 aa17.09■□□□□ 0.33
HMGN1-208ENST00000443046 IL17RBQ9NRM6 502 aa17.09■□□□□ 0.33
HMGN1-208ENST00000443046 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.09■□□□□ 0.33
HMGN1-208ENST00000443046 PTPRSQ13332 1948 aa17.09■□□□□ 0.33
HMGN1-208ENST00000443046 TRIOO75962 3097 aa17.08■□□□□ 0.33
HMGN1-208ENST00000443046 ICAM1P05362 532 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 IQCF3P0C7M6 154 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 ACTN1P12814 892 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 CPT1AP50416 773 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 ALDH5A1P51649 535 aaPredicted RBP17.08■□□□□ 0.32
HMGN1-208ENST00000443046 PPARAQ07869 468 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 IKQ13123 557 aaPredicted RBP17.08■□□□□ 0.32
HMGN1-208ENST00000443046 NBPF20Q3BBV1 942 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 PPP4R3BQ5MIZ7 849 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 NFRKBQ6P4R8 1299 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 NSMFQ6X4W1 530 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 RASGRP2Q7LDG7 609 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 HERC6Q8IVU3 1022 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 HLA-CQ95604 372 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 RANBP17Q9H2T7 1088 aaKnown RBP17.08■□□□□ 0.32
HMGN1-208ENST00000443046 CHMP4BQ9H444 224 aaKnown RBP17.08■□□□□ 0.32
HMGN1-208ENST00000443046 C11orf16Q9NQ32 467 aa17.08■□□□□ 0.32
HMGN1-208ENST00000443046 MUC6Q6W4X9 2439 aa17.07■□□□□ 0.32
HMGN1-208ENST00000443046 GPR37L1O60883 481 aa17.07■□□□□ 0.32
HMGN1-208ENST00000443046 BAATQ14032 418 aaPredicted RBP17.07■□□□□ 0.32
HMGN1-208ENST00000443046 BTNL9Q6UXG8 535 aa17.07■□□□□ 0.32
HMGN1-208ENST00000443046 KHSRPQ92945 711 aaKnown RBP eCLIP17.07■□□□□ 0.321e-7■■□□□ 13.3
HMGN1-208ENST00000443046 NACAP1Q9BZK3 213 aa17.07■□□□□ 0.32
HMGN1-208ENST00000443046 ADD3Q9UEY8 706 aaKnown RBP17.07■□□□□ 0.32
HMGN1-208ENST00000443046 CCPG1Q9ULG6 757 aa17.07■□□□□ 0.32
HMGN1-208ENST00000443046 TRIP12Q14669 1992 aaPredicted RBP17.07■□□□□ 0.32
HMGN1-208ENST00000443046 A6NJR5 290 aa17.06■□□□□ 0.32
HMGN1-208ENST00000443046 FOXP2O15409 715 aa17.06■□□□□ 0.32
HMGN1-208ENST00000443046 SLC3A2P08195 630 aaKnown RBP17.06■□□□□ 0.32
HMGN1-208ENST00000443046 MYL3P08590 195 aa17.06■□□□□ 0.32
HMGN1-208ENST00000443046 PTPN11Q06124 597 aaPredicted RBP17.06■□□□□ 0.32
HMGN1-208ENST00000443046 GRB10Q13322 594 aa17.06■□□□□ 0.32
HMGN1-208ENST00000443046 TMEM31Q5JXX7 168 aa17.06■□□□□ 0.32
HMGN1-208ENST00000443046 TSHZ3Q63HK5 1081 aa17.06■□□□□ 0.32
HMGN1-208ENST00000443046 ARNTL2Q8WYA1 636 aa17.06■□□□□ 0.32
HMGN1-208ENST00000443046 CHMP4CQ96CF2 233 aa17.06■□□□□ 0.32
HMGN1-208ENST00000443046 SEC62Q99442 399 aaKnown RBP17.06■□□□□ 0.32
HMGN1-208ENST00000443046 ISY1Q9ULR0 285 aaKnown RBP17.06■□□□□ 0.32
HMGN1-208ENST00000443046 STX8Q9UNK0 236 aa17.06■□□□□ 0.32
HMGN1-208ENST00000443046 HCN4Q9Y3Q4 1203 aa17.06■□□□□ 0.32
HMGN1-208ENST00000443046 KIF28PB7ZC32 967 aa17.05■□□□□ 0.32
HMGN1-208ENST00000443046 NMT2O60551 498 aa17.05■□□□□ 0.32
HMGN1-208ENST00000443046 BAIAP3O94812 1187 aa17.05■□□□□ 0.32
HMGN1-208ENST00000443046 EDNRBP24530 442 aa17.05■□□□□ 0.32
HMGN1-208ENST00000443046 GPNMBQ14956 572 aa17.05■□□□□ 0.32
HMGN1-208ENST00000443046 SPRED2Q7Z698 418 aa17.05■□□□□ 0.32
HMGN1-208ENST00000443046 NAPBQ9H115 298 aa17.05■□□□□ 0.32
HMGN1-208ENST00000443046 DCTPP1Q9H773 170 aa17.05■□□□□ 0.32
HMGN1-208ENST00000443046 LMCD1Q9NZU5 365 aa17.05■□□□□ 0.32
HMGN1-208ENST00000443046 COL4A4P53420 1690 aaPredicted RBP17.04■□□□□ 0.32
HMGN1-208ENST00000443046 NFIBO00712 420 aa17.04■□□□□ 0.32
HMGN1-208ENST00000443046 NKRFO15226 690 aaKnown RBP eCLIP17.04■□□□□ 0.32
HMGN1-208ENST00000443046 KPNA6O60684 536 aa17.04■□□□□ 0.32
HMGN1-208ENST00000443046 BFSP2Q13515 415 aa17.04■□□□□ 0.32
HMGN1-208ENST00000443046 RETREG2Q8NC44 543 aa17.04■□□□□ 0.32
HMGN1-208ENST00000443046 OR6J1Q8NGC5 347 aa17.04■□□□□ 0.32
HMGN1-208ENST00000443046 DCAF4Q8WV16 495 aa17.04■□□□□ 0.32
HMGN1-208ENST00000443046 CLEC4DQ8WXI8 215 aa17.04■□□□□ 0.32
HMGN1-208ENST00000443046 CTAGE1Q96RT6 745 aa17.04■□□□□ 0.32
HMGN1-208ENST00000443046 INCENPQ9NQS7 918 aa17.04■□□□□ 0.32
HMGN1-208ENST00000443046 GPHNQ9NQX3 736 aaPredicted RBP17.04■□□□□ 0.32
HMGN1-208ENST00000443046 PI4K2BG5E9Z4 385 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms