RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SZT2Q5T011 3432 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 GREB1LQ9C091 1923 aaPredicted RBP9.13□□□□□ -0.95
CD44-211ENST00000442151 MYH4Q9Y623 1939 aa9.13□□□□□ -0.95
CD44-211ENST00000442151 A0A1W2PQ45 241 aaPredicted RBP9.12□□□□□ -0.95
CD44-211ENST00000442151 A0A1W2PQY0 241 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 KPNA6O60684 536 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 ADAMTS4O75173 837 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 C6orf222P0C671 652 aaPredicted RBP9.12□□□□□ -0.95
CD44-211ENST00000442151 NKX3-2P78367 333 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 SMAD3P84022 425 aaKnown RBP9.12□□□□□ -0.95
CD44-211ENST00000442151 NUCB1Q02818 461 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 PPIGQ13427 754 aaKnown RBP eCLIP9.12□□□□□ -0.95
CD44-211ENST00000442151 IMMTQ16891 758 aaKnown RBP9.12□□□□□ -0.95
CD44-211ENST00000442151 CCDC144BQ3MJ40 725 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 ZNF697Q5TEC3 545 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 KCTD1Q719H9 257 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 TMEM199Q8N511 208 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 FAM133AQ8N9E0 248 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 TRIOBPQ9H2D6 2365 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 TMEM265A0A087WTH1 108 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 ARVCFO00192 962 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 NKRFO15226 690 aaKnown RBP eCLIP9.12□□□□□ -0.95
CD44-211ENST00000442151 NMIQ13287 307 aaPredicted RBP9.12□□□□□ -0.95
CD44-211ENST00000442151 B4GALNT3Q6L9W6 998 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 CCDC144CPQ8IYA2 1237 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 RGS22Q8NE09 1264 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 BADQ92934 168 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 WNT2BQ93097 391 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 LRCH3Q96II8 777 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 AGBL1Q96MI9 1066 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 TMEM47Q9BQJ4 181 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 DSCC1Q9BVC3 393 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 RANBP17Q9H2T7 1088 aaKnown RBP9.12□□□□□ -0.95
CD44-211ENST00000442151 GPHNQ9NQX3 736 aaPredicted RBP9.12□□□□□ -0.95
CD44-211ENST00000442151 IL17RBQ9NRM6 502 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 HOMER2Q9NSB8 354 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 POLR3EQ9NVU0 708 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 RAD50Q92878 1312 aa9.12□□□□□ -0.95
CD44-211ENST00000442151 PQBP1O60828 265 aaKnown RBP9.11□□□□□ -0.95
CD44-211ENST00000442151 TIMP1P01033 207 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 ASGR1P07306 291 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 SUPT20HL2P0C7V6 817 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 TAL1P17542 331 aaPredicted RBP9.11□□□□□ -0.95
CD44-211ENST00000442151 VASPP50552 380 aaPredicted RBP9.11□□□□□ -0.95
CD44-211ENST00000442151 FPGSQ05932 587 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 TRDNQ13061 729 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 NSMFQ6X4W1 530 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 MCF2L2Q86YR7 1114 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 FAM227BQ96M60 508 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 KAT14Q9H8E8 782 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 A1CFQ9NQ94 594 aaKnown RBP9.11□□□□□ -0.95
CD44-211ENST00000442151 PDLIM7Q9NR12 457 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 CYP39A1Q9NYL5 469 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 SYNRGQ9UMZ2 1314 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 COL11A1P12107 1806 aaPredicted RBP9.11□□□□□ -0.95
CD44-211ENST00000442151 PARP14Q460N5 1801 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 ALPK3Q96L96 1907 aa9.11□□□□□ -0.95
CD44-211ENST00000442151 PLEKHM2Q8IWE5 1019 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 RPUSD2Q8IZ73 545 aaKnown RBP9.1□□□□□ -0.95
CD44-211ENST00000442151 SAMD3Q8N6K7 520 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 DNERQ8NFT8 737 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 ZNF775Q96BV0 537 aaPredicted RBP9.1□□□□□ -0.95
CD44-211ENST00000442151 YTHDC1Q96MU7 727 aaKnown RBP9.1□□□□□ -0.95
CD44-211ENST00000442151 KCNK17Q96T54 332 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 GPCPD1Q9NPB8 672 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 MTMR10Q9NXD2 777 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 MTMR7Q9Y216 660 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 FRMPD3Q5JV73 1810 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 WDR19Q8NEZ3 1342 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 PLXNA1Q9UIW2 1896 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 A0A0D9SFI3 127 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.1□□□□□ -0.95
CD44-211ENST00000442151 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.1□□□□□ -0.95
CD44-211ENST00000442151 PTPDC1A2A3K4 754 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 SOX1O00570 391 aaPredicted RBP9.1□□□□□ -0.95
CD44-211ENST00000442151 DYNC1LI2O43237 492 aaPredicted RBP9.1□□□□□ -0.95
CD44-211ENST00000442151 CPT1AP50416 773 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 PDE4DQ08499 809 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 ZNF543Q08ER8 600 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 ASPRV1Q53RT3 343 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 VPS53Q5VIR6 699 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 MFSD5Q6N075 450 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 CWC27Q6UX04 472 aaKnown RBP9.1□□□□□ -0.95
CD44-211ENST00000442151 RNF207Q6ZRF8 634 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 KIAA1211Q6ZU35 1233 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 MORC4Q8TE76 937 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 ANKS1AQ92625 1134 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 UBAC1Q9BSL1 405 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 ZNF536O15090 1300 aa9.1□□□□□ -0.95
CD44-211ENST00000442151 ERICH2A1L162 156 aa9.09□□□□□ -0.95
CD44-211ENST00000442151 TRIM43BA6NCK2 446 aa9.09□□□□□ -0.95
CD44-211ENST00000442151 SOWAHBA6NEL2 793 aa9.09□□□□□ -0.95
CD44-211ENST00000442151 PDHBP11177 359 aa9.09□□□□□ -0.95
CD44-211ENST00000442151 PRKCSHP14314 528 aaPredicted RBP9.09□□□□□ -0.95
CD44-211ENST00000442151 CDK7P50613 346 aa9.09□□□□□ -0.95
CD44-211ENST00000442151 CNTN2Q02246 1040 aa9.09□□□□□ -0.95
CD44-211ENST00000442151 BAATQ14032 418 aaPredicted RBP9.09□□□□□ -0.95
CD44-211ENST00000442151 SHHQ15465 462 aa9.09□□□□□ -0.95
CD44-211ENST00000442151 FSCN1Q16658 493 aaKnown RBP9.09□□□□□ -0.95
CD44-211ENST00000442151 CCSAPQ6IQ19 270 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms