RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 IRF5Q13568 498 aa33.79■■■■□ 3
USP42-202ENST00000404008 AIFM3Q96NN9 605 aa33.79■■■■□ 3
USP42-202ENST00000404008 CFBP00751 764 aa33.78■■■■□ 3
USP42-202ENST00000404008 HSD17B4P51659 736 aa33.78■■■■□ 3
USP42-202ENST00000404008 CUL4AQ13619 759 aa33.78■■■■□ 3
USP42-202ENST00000404008 HSCBQ8IWL3 235 aa33.78■■■■□ 3
USP42-202ENST00000404008 SHISA4Q96DD7 197 aa33.78■■■■□ 3
USP42-202ENST00000404008 APBA2Q99767 749 aa33.78■■■■□ 3
USP42-202ENST00000404008 PTPN22Q9Y2R2 807 aa33.78■■■■□ 3
USP42-202ENST00000404008 XRCC5P13010 732 aaKnown RBP33.77■■■■□ 3
USP42-202ENST00000404008 CYP2B6P20813 491 aa33.77■■■■□ 3
USP42-202ENST00000404008 ZNF792Q3KQV3 632 aa33.77■■■■□ 3
USP42-202ENST00000404008 SAMD3Q8N6K7 520 aa33.77■■■■□ 3
USP42-202ENST00000404008 FAM133AQ8N9E0 248 aa33.77■■■■□ 3
USP42-202ENST00000404008 CCDC12Q8WUD4 166 aaPredicted RBP33.77■■■■□ 3
USP42-202ENST00000404008 WASF1Q92558 559 aa33.77■■■■□ 3
USP42-202ENST00000404008 SH3GLB2Q9NR46 395 aa33.77■■■■□ 3
USP42-202ENST00000404008 MAP3K20Q9NYL2 800 aaKnown RBP33.77■■■■□ 3
USP42-202ENST00000404008 VPS54Q9P1Q0 977 aa33.77■■■■□ 3
USP42-202ENST00000404008 CENPFP49454 3210 aa33.77■■■■□ 3
USP42-202ENST00000404008 POTEB2H3BUK9 544 aa33.76■■■■□ 3
USP42-202ENST00000404008 CALML3P27482 149 aa33.76■■■■□ 3
USP42-202ENST00000404008 HMGN5P82970 282 aaKnown RBP33.76■■■■□ 3
USP42-202ENST00000404008 NPLOC4Q8TAT6 608 aa33.76■■■■□ 3
USP42-202ENST00000404008 PSTPIP2Q9H939 334 aa33.76■■■■□ 3
USP42-202ENST00000404008 SLC5A4Q9NY91 659 aa33.76■■■■□ 3
USP42-202ENST00000404008 CNTN2Q02246 1040 aa33.75■■■□□ 2.99
USP42-202ENST00000404008 RAET1EQ8TD07 263 aa33.75■■■□□ 2.99
USP42-202ENST00000404008 DIS3Q9Y2L1 958 aaKnown RBP33.75■■■□□ 2.99
USP42-202ENST00000404008 PTCH2Q9Y6C5 1203 aa33.75■■■□□ 2.99
USP42-202ENST00000404008 ESYT2A0FGR8 921 aa33.74■■■□□ 2.99
USP42-202ENST00000404008 GCOM1H8Y6P7 765 aaPredicted RBP33.74■■■□□ 2.99
USP42-202ENST00000404008 POLR2MP0CAP2 368 aa33.74■■■□□ 2.99
USP42-202ENST00000404008 CCDC148Q8NFR7 591 aa33.74■■■□□ 2.99
USP42-202ENST00000404008 SYTL5Q8TDW5 730 aaPredicted RBP33.74■■■□□ 2.99
USP42-202ENST00000404008 ZMYND12Q9H0C1 365 aa33.74■■■□□ 2.99
USP42-202ENST00000404008 RIC8AQ9NPQ8 531 aa33.74■■■□□ 2.99
USP42-202ENST00000404008 SMCO2A6NFE2 343 aa33.73■■■□□ 2.99
USP42-202ENST00000404008 PIK3CDO00329 1044 aa33.73■■■□□ 2.99
USP42-202ENST00000404008 HOXA13P31271 388 aaPredicted RBP33.73■■■□□ 2.99
USP42-202ENST00000404008 PKN2Q16513 984 aaKnown RBP33.73■■■□□ 2.99
USP42-202ENST00000404008 FAM177A1Q8N128 213 aaPredicted RBP33.73■■■□□ 2.99
USP42-202ENST00000404008 CUL5Q93034 780 aa33.73■■■□□ 2.99
USP42-202ENST00000404008 FGD4Q96M96 766 aa33.73■■■□□ 2.99
USP42-202ENST00000404008 PURBQ96QR8 312 aaKnown RBP33.73■■■□□ 2.99
USP42-202ENST00000404008 ALG1Q9BT22 464 aa33.73■■■□□ 2.99
USP42-202ENST00000404008 COL20A1Q9P218 1284 aa33.73■■■□□ 2.99
USP42-202ENST00000404008 ZSCAN21Q9Y5A6 473 aaPredicted RBP33.73■■■□□ 2.99
USP42-202ENST00000404008 MEIS2O14770 477 aa33.72■■■□□ 2.99
USP42-202ENST00000404008 ADCY7P51828 1080 aa33.72■■■□□ 2.99
USP42-202ENST00000404008 MAML3Q96JK9 1138 aa33.72■■■□□ 2.99
USP42-202ENST00000404008 ASTN1O14525 1302 aa33.72■■■□□ 2.99
USP42-202ENST00000404008 SOWAHBA6NEL2 793 aa33.72■■■□□ 2.99
USP42-202ENST00000404008 CCL14Q16627 93 aa33.72■■■□□ 2.99
USP42-202ENST00000404008 USP17L6PQ6QN14 398 aa33.72■■■□□ 2.99
USP42-202ENST00000404008 TEX2Q8IWB9 1127 aa33.72■■■□□ 2.99
USP42-202ENST00000404008 ADCY3O60266 1144 aa33.71■■■□□ 2.99
USP42-202ENST00000404008 MRPL12P52815 198 aaKnown RBP33.71■■■□□ 2.99
USP42-202ENST00000404008 FBXO46Q6PJ61 603 aaPredicted RBP33.71■■■□□ 2.99
USP42-202ENST00000404008 ZNF467Q7Z7K2 595 aaPredicted RBP33.71■■■□□ 2.99
USP42-202ENST00000404008 GLT8D2Q9H1C3 349 aa33.71■■■□□ 2.99
USP42-202ENST00000404008 C6orf50Q9HD87 102 aa33.71■■■□□ 2.99
USP42-202ENST00000404008 FLRT1Q9NZU1 646 aa33.71■■■□□ 2.99
USP42-202ENST00000404008 LRRC37A2A6NM11 1700 aa33.7■■■□□ 2.99
USP42-202ENST00000404008 XBP1P17861 261 aa33.7■■■□□ 2.98
USP42-202ENST00000404008 OLFML2BQ68BL8 750 aa33.7■■■□□ 2.98
USP42-202ENST00000404008 TRMT44Q8IYL2 757 aaKnown RBP33.7■■■□□ 2.98
USP42-202ENST00000404008 PXYLP1Q8TE99 480 aa33.7■■■□□ 2.98
USP42-202ENST00000404008 ADD3Q9UEY8 706 aaKnown RBP33.7■■■□□ 2.98
USP42-202ENST00000404008 MCM3APO60318 1980 aa33.69■■■□□ 2.98
USP42-202ENST00000404008 GNA11P29992 359 aa33.69■■■□□ 2.98
USP42-202ENST00000404008 UBE2SQ16763 222 aa33.69■■■□□ 2.98
USP42-202ENST00000404008 SLAIN1Q8ND83 568 aa33.69■■■□□ 2.98
USP42-202ENST00000404008 DNERQ8NFT8 737 aa33.69■■■□□ 2.98
USP42-202ENST00000404008 TRIB2Q92519 343 aa33.69■■■□□ 2.98
USP42-202ENST00000404008 GJB4Q9NTQ9 266 aa33.69■■■□□ 2.98
USP42-202ENST00000404008 IGHA2P01877 340 aa33.68■■■□□ 2.98
USP42-202ENST00000404008 ELNP15502 786 aa33.68■■■□□ 2.98
USP42-202ENST00000404008 NLRP5P59047 1200 aa33.68■■■□□ 2.98
USP42-202ENST00000404008 FAM184AQ8NB25 1140 aa33.68■■■□□ 2.98
USP42-202ENST00000404008 INTS4Q96HW7 963 aaKnown RBP33.68■■■□□ 2.98
USP42-202ENST00000404008 TAAR1Q96RJ0 339 aa33.68■■■□□ 2.98
USP42-202ENST00000404008 PHF20Q9BVI0 1012 aa33.68■■■□□ 2.98
USP42-202ENST00000404008 SMC3Q9UQE7 1217 aa33.68■■■□□ 2.98
USP42-202ENST00000404008 GJB2P29033 226 aa33.67■■■□□ 2.98
USP42-202ENST00000404008 ALDH5A1P51649 535 aaPredicted RBP33.67■■■□□ 2.98
USP42-202ENST00000404008 FCHSD1Q86WN1 690 aa33.67■■■□□ 2.98
USP42-202ENST00000404008 KCNJ14Q9UNX9 436 aa33.67■■■□□ 2.98
USP42-202ENST00000404008 ADAMTS3O15072 1205 aa33.66■■■□□ 2.98
USP42-202ENST00000404008 CLK2P49760 499 aaKnown RBP33.66■■■□□ 2.98
USP42-202ENST00000404008 MAMDC4Q6UXC1 1216 aa33.66■■■□□ 2.98
USP42-202ENST00000404008 MSL3Q8N5Y2 521 aaKnown RBP33.66■■■□□ 2.98
USP42-202ENST00000404008 BICD2Q8TD16 824 aa33.66■■■□□ 2.98
USP42-202ENST00000404008 RMDN3Q96TC7 470 aa33.66■■■□□ 2.98
USP42-202ENST00000404008 TINF2Q9BSI4 451 aa33.66■■■□□ 2.98
USP42-202ENST00000404008 GRK4P32298 578 aa33.65■■■□□ 2.98
USP42-202ENST00000404008 NPY5RQ15761 445 aa33.65■■■□□ 2.98
USP42-202ENST00000404008 GALNT17Q6IS24 598 aa33.65■■■□□ 2.98
USP42-202ENST00000404008 NSUN6Q8TEA1 469 aaKnown RBP33.65■■■□□ 2.98
USP42-202ENST00000404008 PCDHA4Q9UN74 947 aa33.65■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms