RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PWP2Q15269 919 aaKnown RBP16.43■□□□□ 0.22
VPS29-201ENST00000360579 DUSP28Q4G0W2 176 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 KIAA1211Q6ZU35 1233 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 EEPD1Q7L9B9 569 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 IFNL3Q8IZI9 196 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 SLC9A7Q96T83 725 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 PDGFCQ9NRA1 345 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 ADD3Q9UEY8 706 aaKnown RBP16.43■□□□□ 0.22
VPS29-201ENST00000360579 ARIH1Q9Y4X5 557 aaPredicted RBP16.43■□□□□ 0.22
VPS29-201ENST00000360579 TNKSO95271 1327 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 CA3P07451 260 aa16.42■□□□□ 0.22
VPS29-201ENST00000360579 MCCP23508 829 aa16.42■□□□□ 0.22
VPS29-201ENST00000360579 CPT1AP50416 773 aa16.42■□□□□ 0.22
VPS29-201ENST00000360579 TFF2Q03403 129 aa16.42■□□□□ 0.22
VPS29-201ENST00000360579 BRDTQ58F21 947 aaPredicted RBP16.42■□□□□ 0.22
VPS29-201ENST00000360579 PHOSPHO2Q8TCD6 241 aa16.42■□□□□ 0.22
VPS29-201ENST00000360579 MORC4Q8TE76 937 aa16.42■□□□□ 0.22
VPS29-201ENST00000360579 NECAB3Q96P71 396 aaPredicted RBP16.42■□□□□ 0.22
VPS29-201ENST00000360579 GPHNQ9NQX3 736 aaPredicted RBP16.42■□□□□ 0.22
VPS29-201ENST00000360579 MTCH2Q9Y6C9 303 aa16.42■□□□□ 0.22
VPS29-201ENST00000360579 REV3LO60673 3130 aa16.42■□□□□ 0.22
VPS29-201ENST00000360579 KIF28PB7ZC32 967 aa16.41■□□□□ 0.22
VPS29-201ENST00000360579 SMARCA5O60264 1052 aaPredicted RBP16.41■□□□□ 0.22
VPS29-201ENST00000360579 TTLL4Q14679 1199 aa16.41■□□□□ 0.22
VPS29-201ENST00000360579 RCSD1Q6JBY9 416 aa16.41■□□□□ 0.22
VPS29-201ENST00000360579 NSMFQ6X4W1 530 aa16.41■□□□□ 0.22
VPS29-201ENST00000360579 VWCEQ96DN2 955 aa16.41■□□□□ 0.22
VPS29-201ENST00000360579 NAPBQ9H115 298 aa16.41■□□□□ 0.22
VPS29-201ENST00000360579 TRMT13Q9NUP7 481 aaKnown RBP16.41■□□□□ 0.22
VPS29-201ENST00000360579 CCPG1Q9ULG6 757 aa16.41■□□□□ 0.22
VPS29-201ENST00000360579 STX8Q9UNK0 236 aa16.41■□□□□ 0.22
VPS29-201ENST00000360579 HCN4Q9Y3Q4 1203 aa16.41■□□□□ 0.22
VPS29-201ENST00000360579 GBF1Q92538 1859 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 M0R2C6 588 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 ICAM1P05362 532 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 CYP2C9P11712 490 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 PTGS1P23219 599 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 KCNQ1P51787 676 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 PURAQ00577 322 aaKnown RBP16.4■□□□□ 0.22
VPS29-201ENST00000360579 MUM1L1Q5H9M0 696 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 KCTD1Q719H9 257 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 DEFB128Q7Z7B8 93 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 RETREG2Q8NC44 543 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 MTG1Q9BT17 334 aaPredicted RBP16.4■□□□□ 0.22
VPS29-201ENST00000360579 WDR11Q9BZH6 1224 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 PRR12Q9ULL5 1215 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 RAD50Q92878 1312 aa16.4■□□□□ 0.22
VPS29-201ENST00000360579 LRRC37A2A6NM11 1700 aa16.39■□□□□ 0.21
VPS29-201ENST00000360579 KPNA6O60684 536 aa16.39■□□□□ 0.21
VPS29-201ENST00000360579 PPARAQ07869 468 aa16.39■□□□□ 0.21
VPS29-201ENST00000360579 MPHOSPH6Q99547 160 aaKnown RBP16.39■□□□□ 0.21
VPS29-201ENST00000360579 DDX49Q9Y6V7 483 aaKnown RBP16.39■□□□□ 0.21
VPS29-201ENST00000360579 RBM47A0AV96 593 aaKnown RBP16.38■□□□□ 0.21
VPS29-201ENST00000360579 TSPY2A6NKD2 308 aa16.38■□□□□ 0.21
VPS29-201ENST00000360579 NKRFO15226 690 aaKnown RBP eCLIP16.38■□□□□ 0.21
VPS29-201ENST00000360579 MYL3P08590 195 aa16.38■□□□□ 0.21
VPS29-201ENST00000360579 ALDH5A1P51649 535 aaPredicted RBP16.38■□□□□ 0.21
VPS29-201ENST00000360579 PTPN11Q06124 597 aaPredicted RBP16.38■□□□□ 0.21
VPS29-201ENST00000360579 BFSP2Q13515 415 aa16.38■□□□□ 0.21
VPS29-201ENST00000360579 FAM47CQ5HY64 1035 aa16.38■□□□□ 0.21
VPS29-201ENST00000360579 TMEM63BQ5T3F8 832 aa16.38■□□□□ 0.21
VPS29-201ENST00000360579 NFRKBQ6P4R8 1299 aa16.38■□□□□ 0.21
VPS29-201ENST00000360579 OR6J1Q8NGC5 347 aa16.38■□□□□ 0.21
VPS29-201ENST00000360579 HLA-CQ95604 372 aa16.38■□□□□ 0.21
VPS29-201ENST00000360579 PNMA2Q9UL42 364 aa16.38■□□□□ 0.21
VPS29-201ENST00000360579 RFXAPO00287 272 aa16.37■□□□□ 0.21
VPS29-201ENST00000360579 BAIAP3O94812 1187 aa16.37■□□□□ 0.21
VPS29-201ENST00000360579 BAATQ14032 418 aaPredicted RBP16.37■□□□□ 0.21
VPS29-201ENST00000360579 HERC6Q8IVU3 1022 aa16.37■□□□□ 0.21
VPS29-201ENST00000360579 DCAF4Q8WV16 495 aa16.37■□□□□ 0.21
VPS29-201ENST00000360579 ARNTL2Q8WYA1 636 aa16.37■□□□□ 0.21
VPS29-201ENST00000360579 CHMP4CQ96CF2 233 aa16.37■□□□□ 0.21
VPS29-201ENST00000360579 FTOQ9C0B1 505 aaKnown RBP eCLIP16.37■□□□□ 0.21
VPS29-201ENST00000360579 RANBP17Q9H2T7 1088 aaKnown RBP16.37■□□□□ 0.21
VPS29-201ENST00000360579 CERS4Q9HA82 394 aa16.37■□□□□ 0.21
VPS29-201ENST00000360579 IQCF3P0C7M6 154 aa16.36■□□□□ 0.21
VPS29-201ENST00000360579 SNAP25P60880 206 aa16.36■□□□□ 0.21
VPS29-201ENST00000360579 TAP1Q03518 808 aa16.36■□□□□ 0.21
VPS29-201ENST00000360579 PPP2R5BQ15173 497 aa16.36■□□□□ 0.21
VPS29-201ENST00000360579 CCDC96Q2M329 555 aa16.36■□□□□ 0.21
VPS29-201ENST00000360579 NBPF20Q3BBV1 942 aa16.36■□□□□ 0.21
VPS29-201ENST00000360579 TMEM31Q5JXX7 168 aa16.36■□□□□ 0.21
VPS29-201ENST00000360579 CCDC155Q8N6L0 562 aa16.36■□□□□ 0.21
VPS29-201ENST00000360579 PURBQ96QR8 312 aaKnown RBP16.36■□□□□ 0.21
VPS29-201ENST00000360579 LRFN3Q9BTN0 628 aa16.36■□□□□ 0.21
VPS29-201ENST00000360579 NOD1Q9Y239 953 aa16.36■□□□□ 0.21
VPS29-201ENST00000360579 PRRC2BQ5JSZ5 2229 aaKnown RBP16.35■□□□□ 0.21
VPS29-201ENST00000360579 PTPDC1A2A3K4 754 aa16.35■□□□□ 0.21
VPS29-201ENST00000360579 B4DLN1 442 aa16.35■□□□□ 0.21
VPS29-201ENST00000360579 TLL1O43897 1013 aa16.35■□□□□ 0.21
VPS29-201ENST00000360579 KCNJ6P48051 423 aa16.35■□□□□ 0.21
VPS29-201ENST00000360579 MRPL12P52815 198 aaKnown RBP16.35■□□□□ 0.21
VPS29-201ENST00000360579 TSHZ3Q63HK5 1081 aa16.35■□□□□ 0.21
VPS29-201ENST00000360579 BTNL9Q6UXG8 535 aa16.35■□□□□ 0.21
VPS29-201ENST00000360579 SCFD2Q8WU76 684 aa16.35■□□□□ 0.21
VPS29-201ENST00000360579 IL17RBQ9NRM6 502 aa16.35■□□□□ 0.21
VPS29-201ENST00000360579 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.35■□□□□ 0.21
VPS29-201ENST00000360579 TTC41PQ6P2S7 1318 aa16.35■□□□□ 0.21
VPS29-201ENST00000360579 EPOPA6NHQ4 379 aa16.34■□□□□ 0.21
VPS29-201ENST00000360579 A6NJR5 290 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms