RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 GIMAP8Q8ND71 665 aaPredicted RBP13.53□□□□□ -0.24
CLIP3-201ENST00000360535 HDAC7Q8WUI4 952 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 SMARCC1Q92922 1105 aaPredicted RBP13.53□□□□□ -0.24
CLIP3-201ENST00000360535 SECISBP2LQ93073 1101 aaKnown RBP13.53□□□□□ -0.24
CLIP3-201ENST00000360535 TRIM9Q9C026 710 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 RRP15Q9Y3B9 282 aaKnown RBP13.53□□□□□ -0.24
CLIP3-201ENST00000360535 EPHB6O15197 1021 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 GGCXP38435 758 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 PTPROQ16827 1216 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 TDRD12Q587J7 1177 aaKnown RBP13.53□□□□□ -0.24
CLIP3-201ENST00000360535 POTEDQ86YR6 584 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 TBCKQ8TEA7 893 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 DNAJC7Q99615 494 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 IFIH1Q9BYX4 1025 aaKnown RBP13.53□□□□□ -0.24
CLIP3-201ENST00000360535 THAP9Q9H5L6 903 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 PDS5AQ29RF7 1337 aaKnown RBP13.53□□□□□ -0.24
CLIP3-201ENST00000360535 STXBP3O00186 592 aa13.52□□□□□ -0.24
CLIP3-201ENST00000360535 RHOBTB3O94955 611 aa13.52□□□□□ -0.24
CLIP3-201ENST00000360535 FGRP09769 529 aa13.52□□□□□ -0.24
CLIP3-201ENST00000360535 SRGNP10124 158 aa13.52□□□□□ -0.24
CLIP3-201ENST00000360535 C12orf60Q5U649 245 aa13.52□□□□□ -0.24
CLIP3-201ENST00000360535 TMC4Q7Z404 712 aa13.52□□□□□ -0.24
CLIP3-201ENST00000360535 COG1Q8WTW3 980 aa13.52□□□□□ -0.24
CLIP3-201ENST00000360535 COA7Q96BR5 231 aa13.52□□□□□ -0.24
CLIP3-201ENST00000360535 PIGSQ96S52 555 aa13.52□□□□□ -0.24
CLIP3-201ENST00000360535 RASSF10A6NK89 507 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 CCNE1P24864 410 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 SF3B3Q15393 1217 aaKnown RBP13.52□□□□□ -0.25
CLIP3-201ENST00000360535 CCDC181Q5TID7 509 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 SND1Q7KZF4 910 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLIP3-201ENST00000360535 CLEC10AQ8IUN9 316 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 FAM71BQ8TC56 605 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 ZHX3Q9H4I2 956 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 KBTBD4Q9NVX7 518 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 CAPN6Q9Y6Q1 641 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 POTEMA6NI47 508 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 PSMD14O00487 310 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 PCP11498 1178 aaKnown RBP13.52□□□□□ -0.25
CLIP3-201ENST00000360535 FECHP22830 423 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 NONOQ15233 471 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLIP3-201ENST00000360535 NFRKBQ6P4R8 1299 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 GLIS3Q8NEA6 775 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 AFAP1L1Q8TED9 768 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 CALML4Q96GE6 196 aa13.52□□□□□ -0.25
CLIP3-201ENST00000360535 SEC63Q9UGP8 760 aaKnown RBP13.52□□□□□ -0.25
CLIP3-201ENST00000360535 TULP1O00294 542 aaPredicted RBP13.51□□□□□ -0.25
CLIP3-201ENST00000360535 EIF4A3P38919 411 aaKnown RBP13.51□□□□□ -0.25
CLIP3-201ENST00000360535 GRM4Q14833 912 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 MAP9Q49MG5 647 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 CACNA2D4Q7Z3S7 1137 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 BARHL2Q9NY43 387 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 CACNA1SQ13698 1873 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 ZNF263O14978 683 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 GNPATO15228 680 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 ZBED6P86452 979 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 CACNB1Q02641 598 aaPredicted RBP13.51□□□□□ -0.25
CLIP3-201ENST00000360535 DGKHQ86XP1 1220 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 EYA3Q99504 573 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 SELENOOQ9BVL4 669 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 BICDL2A1A5D9 508 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 GNAQP50148 359 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 CKAP4Q07065 602 aaKnown RBP13.51□□□□□ -0.25
CLIP3-201ENST00000360535 PICALMQ13492 652 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 RRP36Q96EU6 259 aaKnown RBP13.51□□□□□ -0.25
CLIP3-201ENST00000360535 DHTKD1Q96HY7 919 aaPredicted RBP13.51□□□□□ -0.25
CLIP3-201ENST00000360535 LRRC1Q9BTT6 524 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 RASSF4Q9H2L5 321 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 SEMA6BQ9H3T3 888 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 GPCPD1Q9NPB8 672 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 HPCAL4Q9UM19 191 aa13.51□□□□□ -0.25
CLIP3-201ENST00000360535 A0A1W2PQC6 194 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 TULP2O00295 520 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 USO1O60763 962 aaKnown RBP13.5□□□□□ -0.25
CLIP3-201ENST00000360535 RASSF7Q02833 373 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 KCNB1Q14721 858 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 NFIXQ14938 502 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 KIAA0895Q8NCT3 520 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 DMGDHQ9UI17 866 aaKnown RBP13.5□□□□□ -0.25
CLIP3-201ENST00000360535 F8W031 263 aaPredicted RBP13.5□□□□□ -0.25
CLIP3-201ENST00000360535 SYF2O95926 243 aaKnown RBP13.5□□□□□ -0.25
CLIP3-201ENST00000360535 TNNI2P48788 182 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 APBA1Q02410 837 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 FAM98CQ17RN3 349 aaKnown RBP13.5□□□□□ -0.25
CLIP3-201ENST00000360535 MUM1L1Q5H9M0 696 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 CCDC70Q6NSX1 233 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 SV2BQ7L1I2 683 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 NEK8Q86SG6 692 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 LRRC47Q8N1G4 583 aaKnown RBP13.5□□□□□ -0.25
CLIP3-201ENST00000360535 CCSER1Q9C0I3 900 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 EHD4Q9H223 541 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 C6orf50Q9HD87 102 aa13.5□□□□□ -0.25
CLIP3-201ENST00000360535 TACC1O75410 805 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 GFPT1Q06210 699 aaPredicted RBP13.49□□□□□ -0.25
CLIP3-201ENST00000360535 LRRC31Q6UY01 552 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 SRLQ86TD4 932 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 NELFCDQ8IXH7 590 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 EHBP1Q8NDI1 1231 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 MS4A14Q96JA4 679 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 PCDHA13Q9Y5I0 950 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 TDP2O95551 362 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms