RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 NKX1-1Q15270 411 aaPredicted RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 TAF7Q15545 349 aaPredicted RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 CHRNA2Q15822 529 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 HSP90AA4PQ58FG1 418 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 SLC9C2Q5TAH2 1124 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 STOX1Q6ZVD7 989 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 VPS37DQ86XT2 251 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 NOC3LQ8WTT2 800 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 THOC1Q96FV9 657 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 SEC16BQ96JE7 1060 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 CCDC43Q96MW1 224 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 LRRC2Q9BYS8 371 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 OSBPL7Q9BZF2 842 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 CNOT10Q9H9A5 744 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 ZFATQ9P243 1243 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 SNX12Q9UMY4 172 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 CEP131Q9UPN4 1083 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 HYOU1Q9Y4L1 999 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 PAPPAQ13219 1627 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 KDM3BQ7LBC6 1761 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 ENO4A6NNW6 628 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 GOLGA8BA8MQT2 603 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 ENC1O14682 589 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 N4BP3O15049 544 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 USO1O60763 962 aaKnown RBP9□□□□□ -0.97
ATG4A-201ENST00000343524 ZMYND10O75800 440 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 FLOT1O75955 427 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 ANP32DO95626 131 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 VIMP08670 466 aaKnown RBP9□□□□□ -0.97
ATG4A-201ENST00000343524 EVA1CP58658 441 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 MRPS35P82673 323 aaKnown RBP9□□□□□ -0.97
ATG4A-201ENST00000343524 ITIH4Q14624 930 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 RBM12BQ8IXT5 1001 aaKnown RBP9□□□□□ -0.97
ATG4A-201ENST00000343524 IQCKQ8N0W5 287 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 BICD1Q96G01 975 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 PURBQ96QR8 312 aaKnown RBP9□□□□□ -0.97
ATG4A-201ENST00000343524 PAPOLBQ9NRJ5 636 aaKnown RBP9□□□□□ -0.97
ATG4A-201ENST00000343524 MYO5AQ9Y4I1 1855 aaKnown RBP9□□□□□ -0.97
ATG4A-201ENST00000343524 FLT4P35916 1363 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 COL15A1P39059 1388 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 USP31Q70CQ4 1352 aa9□□□□□ -0.97
ATG4A-201ENST00000343524 A0A1W2PQC6 194 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 LRRD1A4D1F6 860 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 RASSF10A6NK89 507 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 KIF28PB7ZC32 967 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 GCOM1H8Y6P7 765 aaPredicted RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 STXBP3O00186 592 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 DNM1LO00429 736 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 MYZAPP0CAP1 466 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 ALADP13716 330 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 CNGA1P29973 690 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 SH3BGRP55822 239 aaPredicted RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 KIF5AQ12840 1032 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 PPP1R7Q15435 360 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 CMPK2Q5EBM0 449 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 AGBL2Q5U5Z8 902 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 KCTD16Q68DU8 428 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 HIBCHQ6NVY1 386 aaPredicted RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 MTHFD1LQ6UB35 978 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 GIGYF2Q6Y7W6 1299 aaKnown RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 SPATA21Q7Z572 469 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 FOXP4Q8IVH2 680 aaPredicted RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 LMNTD2Q8IXW0 634 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 GALNT15Q8N3T1 639 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 SH2D3CQ8N5H7 860 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 TSEN2Q8NCE0 465 aaKnown RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 SPATA4Q8NEY3 305 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 CCT6BQ92526 530 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 STAMBPL1Q96FJ0 436 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 GSDMAQ96QA5 445 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 MAP3K14Q99558 947 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 DNAJC7Q99615 494 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 NUP58Q9BVL2 599 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 TAF1DQ9H5J8 278 aaPredicted RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 SENP2Q9HC62 589 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 HDAC6Q9UBN7 1215 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 TBC1D2BQ9UPU7 963 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 PCDHGC5Q9Y5F6 944 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 TOPAZ1Q8N9V7 1692 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 MYH8P13535 1937 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 MAP3K19Q56UN5 1328 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 A6NHS1 94 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 LRRC10BA6NIK2 292 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 WASLO00401 505 aaPredicted RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 CCNG1P51959 295 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 TEFQ10587 303 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 MTMR3Q13615 1198 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 CUL4BQ13620 913 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 LRRC23Q53EV4 343 aaPredicted RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 DMRTA1Q5VZB9 504 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 ARHGAP22Q7Z5H3 698 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 TRIM74Q86UV6 250 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 TRIM73Q86UV7 250 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 RETREG2Q8NC44 543 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 CCDC197Q8NCU1 140 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 RBM46Q8TBY0 533 aaKnown RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 WASF1Q92558 559 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 BORCS6Q96GS4 357 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 PYM1Q9BRP8 204 aaKnown RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 LRRC1Q9BTT6 524 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms