RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 KIAA1024Q9UPX6 916 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 KRIT1O00522 736 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 CCNE1P24864 410 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 ADAM9Q13443 819 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 FAM26FQ5R3K3 315 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 LMBR1Q8WVP7 490 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 NDST4Q9H3R1 872 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 NCAPD2Q15021 1401 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 POTEMA6NI47 508 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 TXNRD1Q16881 649 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 CPDO75976 1380 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 VIRMAQ69YN4 1812 aaKnown RBP13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 USP32Q8NFA0 1604 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 MEIS1O00470 390 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 ACTN4O43707 911 aaKnown RBP13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 GTF2IP78347 998 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 WDR66Q8TBY9 1149 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 LARP4BQ92615 738 aaKnown RBP13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 AP1M1Q9BXS5 423 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 FUT8Q9BYC5 575 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 NYXQ9GZU5 481 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 PANK4Q9NVE7 773 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 PCDHA13Q9Y5I0 950 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 DUSP10Q9Y6W6 482 aa13.72□□□□□ -0.21
SNRNP48-201ENST00000342415 RFX7Q2KHR2 1363 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 SLC1A4P43007 532 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 SCNN1DP51172 638 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 TMOD2Q9NZR1 351 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 PXDNQ92626 1479 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 CLTCQ00610 1675 aaKnown RBP13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 LGALS16A8MUM7 142 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 H3BQF6 201 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 VPS41P49754 854 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 GFPT1Q06210 699 aaPredicted RBP13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 UBE2SQ16763 222 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 FNBP4Q8N3X1 1017 aaPredicted RBP13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 CCDC26Q8TAB7 109 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 CELF1Q92879 486 aaKnown RBP13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 BAIAP2L1Q9UHR4 511 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 HPSEQ9Y251 543 aa13.71□□□□□ -0.21
SNRNP48-201ENST00000342415 A0A1W2PRG0 241 aa13.71□□□□□ -0.22
SNRNP48-201ENST00000342415 KIF4AO95239 1232 aa13.71□□□□□ -0.22
SNRNP48-201ENST00000342415 TNFAIP3P21580 790 aa13.71□□□□□ -0.22
SNRNP48-201ENST00000342415 PABPC4Q13310 644 aaKnown RBP eCLIP13.71□□□□□ -0.22
SNRNP48-201ENST00000342415 NNTQ13423 1086 aa13.71□□□□□ -0.22
SNRNP48-201ENST00000342415 PRR16Q569H4 304 aa13.71□□□□□ -0.22
SNRNP48-201ENST00000342415 CNBD1Q8NA66 436 aa13.71□□□□□ -0.22
SNRNP48-201ENST00000342415 MAP3K14Q99558 947 aa13.71□□□□□ -0.22
SNRNP48-201ENST00000342415 EHD2Q9NZN4 543 aa13.71□□□□□ -0.22
SNRNP48-201ENST00000342415 JRKLQ9Y4A0 524 aa13.71□□□□□ -0.22
SNRNP48-201ENST00000342415 TMEM131LA2VDJ0 1609 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 IFNAR2P48551 515 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 TRAPPC10P48553 1259 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 PPP1R7Q15435 360 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 DPP8Q6V1X1 898 aaPredicted RBP13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 SH2D3CQ8N5H7 860 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 MARCH10Q8NA82 808 aaPredicted RBP13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 CTTNBP2NLQ9P2B4 639 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 CCNL1Q9UK58 526 aaPredicted RBP13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 SPOPO43791 374 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 EPB41P11171 864 aaKnown RBP13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 PPP1R2P41236 205 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 BTDP43251 543 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 EARS2Q5JPH6 523 aaKnown RBP13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 DHTKD1Q96HY7 919 aaPredicted RBP13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 ATP8A2Q9NTI2 1148 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 UTP11Q9Y3A2 253 aaKnown RBP13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 STK36Q9NRP7 1315 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 BACH1O14867 736 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 EEF2P13639 858 aaKnown RBP13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 BMP6P22004 513 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 KCNJ6P48051 423 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 CYP2J2P51589 502 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 ADCY1Q08828 1119 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 CCDC50Q8IVM0 306 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 MYCT1Q8N699 235 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 AGXT2Q9BYV1 514 aa13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 ARMCX3Q9UH62 379 aaPredicted RBP13.7□□□□□ -0.22
SNRNP48-201ENST00000342415 ZNF804BA4D1E1 1349 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 CLIC2O15247 247 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 PLCB3Q01970 1234 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 LRRC1Q9BTT6 524 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 SRP68Q9UHB9 627 aaKnown RBP13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 LRRC53A6NM62 1247 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 EZRP15311 586 aaKnown RBP13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 CTNNA2P26232 953 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 RPL13P26373 211 aaKnown RBP13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 NAA25Q14CX7 972 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 KCTD1Q719H9 257 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 TPH2Q8IWU9 490 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 ANKS4BQ8N8V4 417 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 DCP1AQ9NPI6 582 aaPredicted RBP13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 TMEM260Q9NX78 707 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 ERVK-24P63145 666 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 LRRC45Q96CN5 670 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 DNM3Q9UQ16 869 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 ATP6V0A2Q9Y487 856 aa13.69□□□□□ -0.22
SNRNP48-201ENST00000342415 PPFIA4O75335 1185 aa13.68□□□□□ -0.22
SNRNP48-201ENST00000342415 FLOT1O75955 427 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms