RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 B4DLN1 442 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 GCOM1H8Y6P7 765 aaPredicted RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 GJB1P08034 283 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 POLR2MP0CAP2 368 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 CYBAP13498 195 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 EIF2AK2P19525 551 aaKnown RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 PDIA3P30101 505 aaKnown RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 CDC27P30260 824 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 HOXA13P31271 388 aaPredicted RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 ADD1P35611 737 aaKnown RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 ALDH5A1P51649 535 aaPredicted RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 MRPL12P52815 198 aaKnown RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 RCAN1P53805 252 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 AK2P54819 239 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 NAPAP54920 295 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 TOB2Q14106 344 aaPredicted RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 SLC35G1Q2M3R5 365 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 ARHGEF16Q5VV41 709 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 CPLX2Q6PUV4 134 aaKnown RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 FCHSD1Q86WN1 690 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 FBXO16Q8IX29 292 aaPredicted RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 MSL3Q8N5Y2 521 aaKnown RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 FAM133AQ8N9E0 248 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 SMARCC2Q8TAQ2 1214 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 SLC26A6Q9BXS9 759 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 SLKQ9H2G2 1235 aaPredicted RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 PAK6Q9NQU5 681 aaPredicted RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 DDX20Q9UHI6 824 aaKnown RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 DDX49Q9Y6V7 483 aaKnown RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 V9GY48 417 aaPredicted RBP7.54□□□□□ -1.2
CD44-204ENST00000279452 SYNGAP1Q96PV0 1343 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 SEPT4O43236 478 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 MSCO60682 206 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 FARP2O94887 1054 aaPredicted RBP7.53□□□□□ -1.2
CD44-204ENST00000279452 SGPL1O95470 568 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 RARBP10826 455 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 MYCLP12524 364 aaPredicted RBP7.53□□□□□ -1.2
CD44-204ENST00000279452 AKR1A1P14550 325 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 SMARCA1P28370 1054 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 GJA8P48165 433 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 ACVR2BQ13705 512 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 PPP2R5BQ15173 497 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 MAP3K21Q5TCX8 1036 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.53□□□□□ -1.2
CD44-204ENST00000279452 ZNF467Q7Z7K2 595 aaPredicted RBP7.53□□□□□ -1.2
CD44-204ENST00000279452 TRIM22Q8IYM9 498 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 TRPV1Q8NER1 839 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 SYTL5Q8TDW5 730 aaPredicted RBP7.53□□□□□ -1.2
CD44-204ENST00000279452 TBC1D5Q92609 795 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 PHKBQ93100 1093 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 LENG1Q96BZ8 264 aaPredicted RBP7.53□□□□□ -1.2
CD44-204ENST00000279452 MTMR8Q96EF0 704 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 TAAR1Q96RJ0 339 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 RMDN3Q96TC7 470 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 ABHD16BQ9H3Z7 469 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 XPNPEP3Q9NQH7 507 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 FAM184BQ9ULE4 1060 aa7.53□□□□□ -1.2
CD44-204ENST00000279452 SPDYE3A6NKU9 549 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 KBTBD13C9JR72 458 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 CDKL5O76039 1030 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 SNAI1O95863 264 aaPredicted RBP7.52□□□□□ -1.21
CD44-204ENST00000279452 ADCYAP1R1P41586 468 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 MLLT1Q03111 559 aaPredicted RBP7.52□□□□□ -1.21
CD44-204ENST00000279452 SSRP1Q08945 709 aaKnown RBP7.52□□□□□ -1.21
CD44-204ENST00000279452 UBE2SQ16763 222 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 CCDC144BQ3MJ40 725 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 WWC2Q6AWC2 1192 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 MAMDC4Q6UXC1 1216 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 FBXL16Q8N461 479 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 DNERQ8NFT8 737 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 NSUN6Q8TEA1 469 aaKnown RBP7.52□□□□□ -1.21
CD44-204ENST00000279452 SHISA4Q96DD7 197 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 ZNF274Q96GC6 653 aaPredicted RBP7.52□□□□□ -1.21
CD44-204ENST00000279452 FGD4Q96M96 766 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 AGXT2Q9BYV1 514 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 PSTPIP2Q9H939 334 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 COL20A1Q9P218 1284 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 RBM27Q9P2N5 1060 aaKnown RBP7.52□□□□□ -1.21
CD44-204ENST00000279452 NRBP1Q9UHY1 535 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 TPCN1Q9ULQ1 816 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 ASTN1O14525 1302 aa7.52□□□□□ -1.21
CD44-204ENST00000279452 RBBP6Q7Z6E9 1792 aaKnown RBP7.51□□□□□ -1.21
CD44-204ENST00000279452 NID2Q14112 1375 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.51□□□□□ -1.21
CD44-204ENST00000279452 hCG_1984214I3L0E3 225 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 OPLAHO14841 1288 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 ST18O60284 1047 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 PGK1P00558 417 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 C6orf222P0C671 652 aaPredicted RBP7.51□□□□□ -1.21
CD44-204ENST00000279452 ZNF865P0CJ78 1059 aaPredicted RBP7.51□□□□□ -1.21
CD44-204ENST00000279452 SCG2P13521 617 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 CCND2P30279 289 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 HSD17B4P51659 736 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 ADCY7P51828 1080 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 TNFAIP2Q03169 654 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 SCRN1Q12765 414 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 STXBP2Q15833 593 aa7.51□□□□□ -1.21
CD44-204ENST00000279452 PFKFB3Q16875 520 aaPredicted RBP7.51□□□□□ -1.21
CD44-204ENST00000279452 GJC2Q5T442 439 aaPredicted RBP7.51□□□□□ -1.21
CD44-204ENST00000279452 PPP1R18Q6NYC8 613 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms