RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 PRR12Q9ULL5 1215 aa17.25■□□□□ 0.35
SF3B4-201ENST00000271628 PLA2G6O60733 806 aa17.25■□□□□ 0.35
SF3B4-201ENST00000271628 FOSP01100 380 aaPredicted RBP17.25■□□□□ 0.35
SF3B4-201ENST00000271628 FANCCQ00597 558 aa17.25■□□□□ 0.35
SF3B4-201ENST00000271628 DHX8Q14562 1220 aaKnown RBP17.25■□□□□ 0.35
SF3B4-201ENST00000271628 SPICE1Q8N0Z3 855 aa17.25■□□□□ 0.35
SF3B4-201ENST00000271628 ACER1Q8TDN7 264 aa17.25■□□□□ 0.35
SF3B4-201ENST00000271628 CALML4Q96GE6 196 aa17.25■□□□□ 0.35
SF3B4-201ENST00000271628 MTRQ99707 1265 aa17.25■□□□□ 0.35
SF3B4-201ENST00000271628 GINM1Q9NU53 330 aa17.25■□□□□ 0.35
SF3B4-201ENST00000271628 IFNKQ9P0W0 207 aa17.25■□□□□ 0.35
SF3B4-201ENST00000271628 CNOT7Q9UIV1 285 aaKnown RBP17.25■□□□□ 0.35
SF3B4-201ENST00000271628 PP2D1A8MPX8 630 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 EDIL3O43854 480 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 TDP2O95551 362 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 GMPSP49915 693 aaPredicted RBP17.24■□□□□ 0.35
SF3B4-201ENST00000271628 LRMPQ12912 555 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 NAALADL2Q58DX5 795 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 MICALL2Q8IY33 904 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 STAMQ92783 540 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 XPO4Q9C0E2 1151 aaKnown RBP17.24■□□□□ 0.35
SF3B4-201ENST00000271628 KBTBD4Q9NVX7 518 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 FANCLQ9NW38 375 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 DDX25Q9UHL0 483 aaKnown RBP17.24■□□□□ 0.35
SF3B4-201ENST00000271628 USP17L15C9J2P7 530 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 USP17L13C9JLJ4 530 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 USP17L11C9JVI0 530 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 USP17L18D6R9N7 530 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 USP17L22D6RA61 530 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 USP17L17D6RBQ6 530 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 USP17L19D6RCP7 530 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 USP17L20D6RJB6 530 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 MEIS2O14770 477 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 SERPINC1P01008 464 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 CASP1P29466 404 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 RASSF7Q02833 373 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 USP17L24Q0WX57 530 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 CUL4BQ13620 913 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 USP17L6PQ6QN14 398 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 MOXD1Q6UVY6 613 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 CDAN1Q8IWY9 1227 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 CACTINQ8WUQ7 758 aaKnown RBP17.24■□□□□ 0.35
SF3B4-201ENST00000271628 LRWD1Q9UFC0 647 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 NFE2L3Q9Y4A8 694 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 GJA3Q9Y6H8 435 aa17.24■□□□□ 0.35
SF3B4-201ENST00000271628 SHTN1A0MZ66 631 aa17.23■□□□□ 0.35
SF3B4-201ENST00000271628 RIOK3O14730 519 aaKnown RBP17.23■□□□□ 0.35
SF3B4-201ENST00000271628 SLC37A4O43826 429 aa17.23■□□□□ 0.35
SF3B4-201ENST00000271628 RPN1P04843 607 aaKnown RBP17.23■□□□□ 0.35
SF3B4-201ENST00000271628 UBASH3AP57075 661 aa17.23■□□□□ 0.35
SF3B4-201ENST00000271628 AMPD3Q01432 767 aa17.23■□□□□ 0.35
SF3B4-201ENST00000271628 FAM160B2Q86V87 743 aa17.23■□□□□ 0.35
SF3B4-201ENST00000271628 LRRC8AQ8IWT6 810 aa17.23■□□□□ 0.35
SF3B4-201ENST00000271628 UPF1Q92900 1129 aaKnown RBP eCLIP17.23■□□□□ 0.35
SF3B4-201ENST00000271628 ANO3Q9BYT9 981 aa17.23■□□□□ 0.35
SF3B4-201ENST00000271628 BLZF1Q9H2G9 400 aa17.23■□□□□ 0.35
SF3B4-201ENST00000271628 GSDMDP57764 484 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 USH1GQ495M9 461 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 ZNF658Q5TYW1 1059 aaPredicted RBP17.22■□□□□ 0.35
SF3B4-201ENST00000271628 PAXBP1Q9Y5B6 917 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 MYH7BA7E2Y1 1941 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 CYP3A7-CYP3A51PA0A087WV96 503 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 PSDA5PKW4 1024 aaPredicted RBP17.22■□□□□ 0.35
SF3B4-201ENST00000271628 PHF20L1A8MW92 1017 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 CTIFO43310 598 aaKnown RBP17.22■□□□□ 0.35
SF3B4-201ENST00000271628 MARCH6O60337 910 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 ATP1A3P13637 1013 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 PLCG1P19174 1290 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 CYP3A7P24462 503 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 FMR1Q06787 632 aaKnown RBP eCLIP17.22■□□□□ 0.35
SF3B4-201ENST00000271628 KCNB1Q14721 858 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 CCDC144BQ3MJ40 725 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 FAM83BQ5T0W9 1011 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 ZNF710Q8N1W2 664 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 TEPSINQ96N21 525 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 GTPBP4Q9BZE4 634 aaKnown RBP17.22■□□□□ 0.35
SF3B4-201ENST00000271628 FEM1BQ9UK73 627 aa17.22■□□□□ 0.35
SF3B4-201ENST00000271628 SPDYE3A6NKU9 549 aa17.21■□□□□ 0.35
SF3B4-201ENST00000271628 EGFRP00533 1210 aa17.21■□□□□ 0.35
SF3B4-201ENST00000271628 CDK11BP21127 795 aaKnown RBP17.21■□□□□ 0.35
SF3B4-201ENST00000271628 SPATA1Q5VX52 437 aa17.21■□□□□ 0.35
SF3B4-201ENST00000271628 KRT79Q5XKE5 535 aa17.21■□□□□ 0.35
SF3B4-201ENST00000271628 CCDC94Q9BW85 323 aaPredicted RBP17.21■□□□□ 0.35
SF3B4-201ENST00000271628 PCDHA12Q9UN75 941 aa17.21■□□□□ 0.35
SF3B4-201ENST00000271628 PPP1R3GB7ZBB8 358 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 H7C1D1 291 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 PIK3CDO00329 1044 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 ZNF18P17022 549 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 SNAP25P60880 206 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 KIF4BQ2VIQ3 1234 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 SAMD7Q7Z3H4 446 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 FILIP1Q7Z7B0 1213 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 CCDC47Q96A33 483 aaKnown RBP17.2■□□□□ 0.34
SF3B4-201ENST00000271628 HOOK2Q96ED9 719 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 MMTAG2Q9BU76 263 aaKnown RBP17.2■□□□□ 0.34
SF3B4-201ENST00000271628 STK17AQ9UEE5 414 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 HACL1Q9UJ83 578 aa17.2■□□□□ 0.34
SF3B4-201ENST00000271628 CTNND1O60716 968 aaKnown RBP17.2■□□□□ 0.34
SF3B4-201ENST00000271628 TBC1D10BQ4KMP7 808 aaPredicted RBP17.2■□□□□ 0.34
SF3B4-201ENST00000271628 KIAA1755Q5JYT7 1200 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms