RNA–Protein interactions for RNA: YMR123W

PKR1, Transcript of V-ATPase assembly factor, yeast

Gene PKR1, Length 369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PKR1	YMR123W	GLO2	Q05584	274 aa		2.6	□□□□□ -1.99
PKR1	YMR123W	RSA1	Q08932	381 aa		2.6	□□□□□ -1.99
PKR1	YMR123W	TY1B-DR4	Q07793	1604 aa		2.6	□□□□□ -1.99
PKR1	YMR123W	ARD1	P07347	238 aa	Predicted RBP	2.59	□□□□□ -1.99
PKR1	YMR123W	RPL19A	P0CX82	189 aa	Known RBP	2.59	□□□□□ -1.99
PKR1	YMR123W	RPL19B	P0CX83	189 aa	Predicted RBP	2.59	□□□□□ -1.99
PKR1	YMR123W	PEP5	P12868	1029 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	CBS2	P14905	389 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	AMD1	P15274	810 aa	Known RBP	2.59	□□□□□ -1.99
PKR1	YMR123W	KGD1	P20967	1014 aa	Known RBP	2.59	□□□□□ -1.99
PKR1	YMR123W	SGV1	P23293	657 aa	Known RBP	2.59	□□□□□ -1.99
PKR1	YMR123W	IMG1	P25626	169 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	SPC110	P32380	944 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	PTR2	P32901	601 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	YKL023W	P36103	277 aa	Known RBP	2.59	□□□□□ -1.99
PKR1	YMR123W	AVT5	P38176	459 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	RPR2	P40571	144 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	YFR016C	P43597	1233 aa	Known RBP	2.59	□□□□□ -1.99
PKR1	YMR123W	PTR3	P43606	678 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	YJL132W	P47014	750 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	SHR3	Q02774	210 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	YKU80	Q04437	629 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	VIP1	Q06685	1146 aa	Known RBP	2.59	□□□□□ -1.99
PKR1	YMR123W	OPY2	Q06810	360 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	SET6	Q12529	373 aa		2.59	□□□□□ -1.99
PKR1	YMR123W	MF(ALPHA)1	P01149	165 aa		2.58	□□□□□ -2
PKR1	YMR123W	APE1	P14904	514 aa		2.58	□□□□□ -2
PKR1	YMR123W	KAR3	P17119	729 aa		2.58	□□□□□ -2
PKR1	YMR123W	SUI2	P20459	304 aa	Known RBP	2.58	□□□□□ -2
PKR1	YMR123W	MCK1	P21965	375 aa	Known RBP	2.58	□□□□□ -2
PKR1	YMR123W	YIH1	P25637	258 aa		2.58	□□□□□ -2
PKR1	YMR123W	ATS1	P31386	333 aa		2.58	□□□□□ -2
PKR1	YMR123W	AGA1	P32323	725 aa		2.58	□□□□□ -2
PKR1	YMR123W	AUR1	P36107	401 aa	Predicted RBP	2.58	□□□□□ -2
PKR1	YMR123W	RPL32	P38061	130 aa	Known RBP	2.58	□□□□□ -2
PKR1	YMR123W	ICS2	P38284	255 aa		2.58	□□□□□ -2
PKR1	YMR123W	OSH3	P38713	996 aa	Known RBP	2.58	□□□□□ -2
PKR1	YMR123W	CIN4	P39110	191 aa		2.58	□□□□□ -2
PKR1	YMR123W	VPS52	P39904	641 aa		2.58	□□□□□ -2
PKR1	YMR123W	SNG1	P46950	547 aa		2.58	□□□□□ -2
PKR1	YMR123W	DUG3	P53871	357 aa		2.58	□□□□□ -2
PKR1	YMR123W	BUD22	Q04347	519 aa	Known RBP	2.58	□□□□□ -2
PKR1	YMR123W	LUC7	Q07508	261 aa	Predicted RBP	2.58	□□□□□ -2
PKR1	YMR123W	YLL056C	Q12177	298 aa		2.58	□□□□□ -2
PKR1	YMR123W	NCE102	Q12207	173 aa	RIP-Chip data	2.58	□□□□□ -2	not detected
PKR1	YMR123W	CAR1	P00812	333 aa	Known RBP	2.57	□□□□□ -2
PKR1	YMR123W	YCR007C	P25354	239 aa		2.57	□□□□□ -2
PKR1	YMR123W	SGF29	P25554	259 aa		2.57	□□□□□ -2
PKR1	YMR123W	DPB3	P27344	201 aa		2.57	□□□□□ -2
PKR1	YMR123W	SSE2	P32590	693 aa	Known RBP	2.57	□□□□□ -2
PKR1	YMR123W	YBP1	P38315	674 aa		2.57	□□□□□ -2
PKR1	YMR123W	YHR210C	P38893	341 aa		2.57	□□□□□ -2
PKR1	YMR123W	YJR154W	P47181	346 aa		2.57	□□□□□ -2
PKR1	YMR123W	YGR126W	P53274	230 aa		2.57	□□□□□ -2
PKR1	YMR123W	RTS3	P53289	263 aa		2.57	□□□□□ -2
PKR1	YMR123W	BNA5	Q05979	453 aa		2.57	□□□□□ -2
PKR1	YMR123W	SYO1	Q07395	620 aa		2.57	□□□□□ -2
PKR1	YMR123W	YOR365C	Q08844	703 aa		2.57	□□□□□ -2
PKR1	YMR123W	YDL009C	Q12210	107 aa		2.57	□□□□□ -2
PKR1	YMR123W	AYT1	Q12226	474 aa		2.57	□□□□□ -2
PKR1	YMR123W	RPL20A	P0CX23	172 aa	Known RBP	2.56	□□□□□ -2
PKR1	YMR123W	RPL20B	P0CX24	172 aa	Predicted RBP	2.56	□□□□□ -2
PKR1	YMR123W	ATR1	P13090	542 aa		2.56	□□□□□ -2
PKR1	YMR123W	CHS3	P29465	1165 aa		2.56	□□□□□ -2
PKR1	YMR123W	SAC6	P32599	642 aa	Known RBP	2.56	□□□□□ -2
PKR1	YMR123W	YBR144C	P34215	104 aa		2.56	□□□□□ -2
PKR1	YMR123W	MTC4	P38335	694 aa	Known RBP	2.56	□□□□□ -2
PKR1	YMR123W	TIF5	P38431	405 aa	Known RBP	2.56	□□□□□ -2
PKR1	YMR123W	YPI1	P43587	155 aa		2.56	□□□□□ -2
PKR1	YMR123W	DSD1	P53095	428 aa		2.56	□□□□□ -2
PKR1	YMR123W	DRN1	P53255	507 aa	Known RBP	2.56	□□□□□ -2
PKR1	YMR123W	BUD32	P53323	261 aa		2.56	□□□□□ -2
PKR1	YMR123W	MEP3	P53390	489 aa		2.56	□□□□□ -2
PKR1	YMR123W	YML037C	Q03703	340 aa		2.56	□□□□□ -2
PKR1	YMR123W	SMA2	Q04658	369 aa		2.56	□□□□□ -2
PKR1	YMR123W	FMP40	Q08968	688 aa	Predicted RBP	2.56	□□□□□ -2
PKR1	YMR123W	SPE4	Q12455	300 aa		2.56	□□□□□ -2
PKR1	YMR123W	HEM2	P05373	342 aa		2.55	□□□□□ -2
PKR1	YMR123W	TRX2	P22803	104 aa	Known RBP	2.55	□□□□□ -2
PKR1	YMR123W	PMU1	P36069	295 aa		2.55	□□□□□ -2
PKR1	YMR123W	YBL029W	P38201	376 aa		2.55	□□□□□ -2
PKR1	YMR123W	PCA1	P38360	1216 aa		2.55	□□□□□ -2
PKR1	YMR123W	NPR2	P39923	615 aa		2.55	□□□□□ -2
PKR1	YMR123W	IDP2	P41939	412 aa		2.55	□□□□□ -2
PKR1	YMR123W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	2.55	□□□□□ -2	not detected
PKR1	YMR123W	RLI1	Q03195	608 aa	Known RBP	2.55	□□□□□ -2
PKR1	YMR123W	SLD5	Q03406	294 aa		2.55	□□□□□ -2
PKR1	YMR123W	YMR018W	Q04364	514 aa		2.55	□□□□□ -2
PKR1	YMR123W	NOP58	Q12499	511 aa	Known RBP	2.55	□□□□□ -2
PKR1	YMR123W	SPA2	P23201	1466 aa	Known RBP	2.54	□□□□□ -2
PKR1	YMR123W	SUC2	P00724	532 aa		2.54	□□□□□ -2
PKR1	YMR123W	PEP4	P07267	405 aa	Known RBP	2.54	□□□□□ -2
PKR1	YMR123W	NOP1	P15646	327 aa	Known RBP	2.54	□□□□□ -2
PKR1	YMR123W	ART10	P18634	518 aa	Known RBP	2.54	□□□□□ -2
PKR1	YMR123W	YCK1	P23291	538 aa		2.54	□□□□□ -2
PKR1	YMR123W	SSH4	P32343	579 aa		2.54	□□□□□ -2
PKR1	YMR123W	TUL1	P36096	758 aa		2.54	□□□□□ -2
PKR1	YMR123W	CCT6	P39079	546 aa		2.54	□□□□□ -2
PKR1	YMR123W	ALG8	P40351	577 aa		2.54	□□□□□ -2
PKR1	YMR123W	YGL242C	P53066	181 aa		2.54	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 41.5 ms