RNA–Protein interactions for RNA: YLR397C

AFG2, Transcript of ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex, yeast

Gene AFG2, Length 2,343 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
AFG2	YLR397C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	7.24	□□□□□ -1.25	not detected
AFG2	YLR397C	YFL040W	P43562	540 aa		7.24	□□□□□ -1.25
AFG2	YLR397C	ABM1	P47146	123 aa		7.24	□□□□□ -1.25
AFG2	YLR397C	SPT20	P50875	604 aa		7.24	□□□□□ -1.25
AFG2	YLR397C	IMA1	P53051	589 aa		7.24	□□□□□ -1.25
AFG2	YLR397C	MNP1	P53163	194 aa	Predicted RBP	7.24	□□□□□ -1.25
AFG2	YLR397C	NMA2	P53204	395 aa		7.24	□□□□□ -1.25
AFG2	YLR397C	STP1	Q00947	519 aa		7.24	□□□□□ -1.25
AFG2	YLR397C	EEB1	Q02891	456 aa		7.24	□□□□□ -1.25
AFG2	YLR397C	RRD2	Q12461	358 aa		7.24	□□□□□ -1.25
AFG2	YLR397C	MET8	P15807	274 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	APA1	P16550	321 aa	Known RBP	7.23	□□□□□ -1.25
AFG2	YLR397C	NDI1	P32340	513 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	JEN1	P36035	616 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	YKL069W	P36088	180 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	ECM13	P38195	257 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	PCA1	P38360	1216 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	RRP4	P38792	359 aa	Known RBP	7.23	□□□□□ -1.25
AFG2	YLR397C	ATG7	P38862	630 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	VMA13	P41807	478 aa	Known RBP	7.23	□□□□□ -1.25
AFG2	YLR397C	RPS7B	P48164	190 aa	Known RBP	7.23	□□□□□ -1.25
AFG2	YLR397C	NUT1	P53114	1132 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	CWC24	P53769	259 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	KAP120	Q02932	1032 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	YOR114W	Q12219	294 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	AI5_BETA	Q9ZZX0	354 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	MET3	P08536	511 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	APA2	P22108	325 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	NGG1	P32494	702 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	PRP21	P32524	280 aa	Predicted RBP	7.23	□□□□□ -1.25
AFG2	YLR397C	GDH2	P33327	1092 aa	Known RBP	7.23	□□□□□ -1.25
AFG2	YLR397C	TRM2	P33753	639 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	STV1	P37296	890 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	AIM3	P38266	947 aa	Known RBP	7.23	□□□□□ -1.25
AFG2	YLR397C	SUL1	P38359	859 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	LYS9	P38999	446 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	CHS6	P40955	746 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	YGR127W	P53275	312 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	DPB4	Q04603	196 aa	Known RBP	7.23	□□□□□ -1.25
AFG2	YLR397C	SWF1	Q04629	336 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	RBS1	Q05672	457 aa	Known RBP	7.23	□□□□□ -1.25
AFG2	YLR397C	YDR306C	Q06640	478 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	ISN1	Q99312	450 aa		7.23	□□□□□ -1.25
AFG2	YLR397C	LEU4	P06208	619 aa	Known RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	SNF3	P10870	884 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	PCK1	P10963	549 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	MAS2	P11914	482 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	PET9	P18239	318 aa	Known RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	CBP3	P21560	335 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	RPL24B	P24000	155 aa	Known RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	CPR3	P25719	182 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	HYM1	P32464	399 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	MSS1	P32559	526 aa	Predicted RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	POP7	P38291	140 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	IES5	P40060	125 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	PSA1	P41940	361 aa	Known RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	GNA1	P43577	159 aa	Predicted RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	PTK2	P47116	818 aa	Known RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	YPT32	P51996	222 aa	Known RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	PYK2	P52489	506 aa	Known RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	MND1	P53102	219 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	FOL1	P53848	824 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	YDR286C	Q05530	114 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	BUR2	Q05949	395 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	HDA3	Q06623	655 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	GRC3	Q07845	632 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	YDR061W	Q12298	539 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	APC1	P53886	1748 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	SCM4	P32564	187 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	PMT1	P33775	817 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	IPI1	P38803	334 aa	Predicted RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	EGD2	P38879	174 aa	Known RBP	7.22	□□□□□ -1.25
AFG2	YLR397C	SEN34	P39707	275 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	EXO1	P39875	702 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	IRC24	P40580	263 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	YJL043W	P47053	257 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	CPR7	P47103	393 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	HOC1	P47124	396 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	CUL3	P53202	744 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	IMO32	P53219	342 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	VID22	Q05934	901 aa		7.22	□□□□□ -1.25
AFG2	YLR397C	TY4B-H	P0C2J7	1802 aa		7.21	□□□□□ -1.25
AFG2	YLR397C	TY4B-J	P47024	1803 aa		7.21	□□□□□ -1.25
AFG2	YLR397C	TPK2	P06245	380 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	RAD10	P06838	210 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	MATALPHA1	P0CY06	175 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	HMLALPHA1	P0CY07	175 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	DAL81	P21657	970 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	MUD1	P32605	298 aa	Known RBP	7.21	□□□□□ -1.26
AFG2	YLR397C	FRE1	P32791	686 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	SUI1	P32911	108 aa	Known RBP	7.21	□□□□□ -1.26
AFG2	YLR397C	GUA1	P38625	525 aa	Known RBP	7.21	□□□□□ -1.26
AFG2	YLR397C	OSH7	P38755	437 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	DUN1	P39009	513 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	NDE1	P40215	560 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	MNN5	P46982	586 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	LYS20	P48570	428 aa	Known RBP	7.21	□□□□□ -1.26
AFG2	YLR397C	INN1	P53901	409 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	GRX5	Q02784	150 aa		7.21	□□□□□ -1.26
AFG2	YLR397C	PUS9	Q12069	462 aa		7.21	□□□□□ -1.26

Retrieved 100 of 5,963 RNA–protein pairs in 25.5 ms