RNA–Protein interactions for RNA: YHR200W

RPN10, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeast

Gene RPN10, Length 807 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN10	YHR200W	GIP1	P38229	639 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	GIM4	P40005	111 aa	Known RBP	13.59	□□□□□ -0.23
RPN10	YHR200W	TIS11	P47977	285 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	MPS2	P53159	387 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	YDR476C	Q03362	224 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	GLO2	Q05584	274 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	YLR413W	Q06689	675 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	SGT1	Q08446	395 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	GPB1	Q08886	897 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	VPS68	Q12016	184 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	MEX67	Q99257	599 aa	Known RBP	13.59	□□□□□ -0.23
RPN10	YHR200W	Q0182	Q9ZZW1	134 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	INH1	P01097	85 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	ZIP1	P31111	875 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	ATP11	P32453	318 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	MPS3	P47069	682 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	YJR149W	P47177	404 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	MTO1	P53070	669 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	MDM34	P53083	459 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	NPY1	P53164	384 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	PRP38	Q00723	242 aa	Predicted RBP	13.58	□□□□□ -0.24
RPN10	YHR200W	YET2	Q04210	160 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	FAR10	Q06001	478 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	CDA1	Q06702	301 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	YEH2	Q07950	538 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	IOC2	Q12072	812 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	SRN2	Q99176	213 aa		13.58	□□□□□ -0.24
RPN10	YHR200W	PHO5	P00635	467 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	STE3	P06783	470 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	PDC5	P16467	563 aa	Known RBP	13.57	□□□□□ -0.24
RPN10	YHR200W	GFD2	P25370	566 aa	Known RBP	13.57	□□□□□ -0.24
RPN10	YHR200W	CSM1	P25651	190 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	ATP7	P30902	174 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	CCR4	P31384	837 aa	Known RBP	13.57	□□□□□ -0.24
RPN10	YHR200W	PTC1	P35182	281 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	CAF4	P36130	643 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	YBL029W	P38201	376 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	JEM1	P40358	645 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	DAN4	P47179	1161 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	YGR015C	P53208	328 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	HST3	P53687	447 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	SMA1	Q02651	245 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	VHS1	Q03785	461 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	GGA1	Q06336	557 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	TRM8	Q12009	286 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	YDR056C	Q12025	205 aa		13.57	□□□□□ -0.24
RPN10	YHR200W	CCH1	P50077	2039 aa		13.56	□□□□□ -0.24
RPN10	YHR200W	HOM2	P13663	365 aa	Known RBP	13.56	□□□□□ -0.24
RPN10	YHR200W	REC107	P21651	314 aa		13.56	□□□□□ -0.24
RPN10	YHR200W	FRE2	P36033	711 aa		13.56	□□□□□ -0.24
RPN10	YHR200W	YJL070C	P40361	888 aa		13.56	□□□□□ -0.24
RPN10	YHR200W	NBP35	P52920	328 aa		13.56	□□□□□ -0.24
RPN10	YHR200W	YPL113C	Q02961	396 aa		13.56	□□□□□ -0.24
RPN10	YHR200W	MMT1	Q03218	510 aa		13.56	□□□□□ -0.24
RPN10	YHR200W	ECM11	Q04110	302 aa		13.56	□□□□□ -0.24
RPN10	YHR200W	MCH5	Q08777	521 aa		13.56	□□□□□ -0.24
RPN10	YHR200W	SAM4	Q08985	325 aa	Known RBP	13.56	□□□□□ -0.24
RPN10	YHR200W	PRT1	P06103	763 aa	Known RBP	13.55	□□□□□ -0.24
RPN10	YHR200W	SDH3	P33421	198 aa		13.55	□□□□□ -0.24
RPN10	YHR200W	BMT2	P38278	337 aa		13.55	□□□□□ -0.24
RPN10	YHR200W	YHR127W	P38833	243 aa	Known RBP	13.55	□□□□□ -0.24
RPN10	YHR200W	GTO1	P48239	356 aa		13.55	□□□□□ -0.24
RPN10	YHR200W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	13.55	□□□□□ -0.24	not detected
RPN10	YHR200W	ATG29	Q12092	213 aa		13.55	□□□□□ -0.24
RPN10	YHR200W	HUA2	Q12134	243 aa		13.55	□□□□□ -0.24
RPN10	YHR200W	PST1	Q12355	444 aa		13.55	□□□□□ -0.24
RPN10	YHR200W	YCL012C	Q8J0M4	134 aa		13.55	□□□□□ -0.24
RPN10	YHR200W	TPK2	P06245	380 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	YCK2	P23292	546 aa	Known RBP	13.54	□□□□□ -0.24
RPN10	YHR200W	YSR3	P23501	404 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	SPS22	P25380	463 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	YCR087C-A	P37263	153 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	FTH1	P38310	465 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	MET12	P46151	657 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	YJR030C	P47101	745 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	YPT32	P51996	222 aa	Known RBP	13.54	□□□□□ -0.24
RPN10	YHR200W	IRC15	Q02733	499 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	ACL4	Q03771	387 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	DYN3	Q04949	312 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	YMR034C	Q05131	434 aa	Predicted RBP	13.54	□□□□□ -0.24
RPN10	YHR200W	PSR1	Q07800	427 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	PLB3	Q08108	686 aa		13.54	□□□□□ -0.24
RPN10	YHR200W	MDM35	O60200	86 aa		13.53	□□□□□ -0.24
RPN10	YHR200W	HXK2	P04807	486 aa	Known RBP	13.53	□□□□□ -0.24
RPN10	YHR200W	CLN2	P20438	545 aa		13.53	□□□□□ -0.24
RPN10	YHR200W	OCA4	P25366	362 aa		13.53	□□□□□ -0.24
RPN10	YHR200W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	13.53	□□□□□ -0.24	not detected
RPN10	YHR200W	SIN4	P32259	974 aa		13.53	□□□□□ -0.24
RPN10	YHR200W	HXT5	P38695	592 aa		13.53	□□□□□ -0.24
RPN10	YHR200W	RRP3	P38712	501 aa	Known RBP	13.53	□□□□□ -0.24
RPN10	YHR200W	YEL073C	P39974	107 aa		13.53	□□□□□ -0.24
RPN10	YHR200W	NDE1	P40215	560 aa		13.53	□□□□□ -0.24
RPN10	YHR200W	PFA3	P42836	336 aa		13.53	□□□□□ -0.24
RPN10	YHR200W	ART5	P53244	586 aa	Known RBP	13.53	□□□□□ -0.24
RPN10	YHR200W	PRO2	P54885	456 aa	Known RBP	13.53	□□□□□ -0.24
RPN10	YHR200W	HFD1	Q04458	532 aa		13.53	□□□□□ -0.24
RPN10	YHR200W	RAD34	Q06665	692 aa		13.53	□□□□□ -0.24
RPN10	YHR200W	HTA2	P04912	132 aa		13.52	□□□□□ -0.25
RPN10	YHR200W	RMA1	P36001	430 aa	Known RBP	13.52	□□□□□ -0.25
RPN10	YHR200W	DMA1	P38823	416 aa		13.52	□□□□□ -0.25

Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms