RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W RIM1P32445 135 aaKnown RBP5.97□□□□□ -1.45
RPN11YFR004W SMI1P32566 505 aa5.97□□□□□ -1.45
RPN11YFR004W PTC1P35182 281 aa5.97□□□□□ -1.45
RPN11YFR004W PDX3P38075 228 aaKnown RBP5.97□□□□□ -1.45
RPN11YFR004W TDA11P38854 504 aa5.97□□□□□ -1.45
RPN11YFR004W TIF34P40217 347 aaKnown RBP5.97□□□□□ -1.45
RPN11YFR004W UBP7P40453 1071 aa5.97□□□□□ -1.45
RPN11YFR004W DIM1P41819 318 aaKnown RBP5.97□□□□□ -1.45
RPN11YFR004W MNN10P50108 393 aaKnown RBP5.97□□□□□ -1.45
RPN11YFR004W SCW11P53189 542 aa5.97□□□□□ -1.45
RPN11YFR004W YNR040WP53736 256 aa5.97□□□□□ -1.45
RPN11YFR004W REX2P54964 269 aaKnown RBP5.97□□□□□ -1.45
RPN11YFR004W AIM32Q04689 311 aa5.97□□□□□ -1.45
RPN11YFR004W ATG26Q06321 1198 aa5.97□□□□□ -1.45
RPN11YFR004W CRN1Q06440 651 aa5.97□□□□□ -1.45
RPN11YFR004W PUF2Q12221 1075 aaKnown RBP RIP-Chip data5.97□□□□□ -1.45not detected
RPN11YFR004W COX3P00420 269 aa5.96□□□□□ -1.46
RPN11YFR004W CAR1P00812 333 aaKnown RBP5.96□□□□□ -1.46
RPN11YFR004W ATP12P22135 325 aa5.96□□□□□ -1.46
RPN11YFR004W NPR1P22211 790 aa5.96□□□□□ -1.46
RPN11YFR004W BEM1P29366 551 aa5.96□□□□□ -1.46
RPN11YFR004W WBP1P33767 430 aaKnown RBP5.96□□□□□ -1.46
RPN11YFR004W URA8P38627 578 aaPredicted RBP5.96□□□□□ -1.46
RPN11YFR004W LAM1P38851 1228 aa5.96□□□□□ -1.46
RPN11YFR004W ERV46P39727 415 aa5.96□□□□□ -1.46
RPN11YFR004W SCS2P40075 244 aaKnown RBP5.96□□□□□ -1.46
RPN11YFR004W ROK1P45818 564 aaPredicted RBP5.96□□□□□ -1.46
RPN11YFR004W RPS0BP46654 252 aaKnown RBP5.96□□□□□ -1.46
RPN11YFR004W YJL132WP47014 750 aa5.96□□□□□ -1.46
RPN11YFR004W AIM23P47015 356 aa5.96□□□□□ -1.46
RPN11YFR004W NOP9P47077 666 aaKnown RBP5.96□□□□□ -1.46
RPN11YFR004W YJR098CP47139 656 aa5.96□□□□□ -1.46
RPN11YFR004W PEX8P53248 589 aa5.96□□□□□ -1.46
RPN11YFR004W GND2P53319 492 aa5.96□□□□□ -1.46
RPN11YFR004W YTP1P53584 459 aa5.96□□□□□ -1.46
RPN11YFR004W CUS2P53830 285 aaPredicted RBP5.96□□□□□ -1.46
RPN11YFR004W PRO2P54885 456 aaKnown RBP5.96□□□□□ -1.46
RPN11YFR004W HMO1Q03973 246 aaKnown RBP5.96□□□□□ -1.46
RPN11YFR004W SPO20Q04359 397 aa5.96□□□□□ -1.46
RPN11YFR004W SWC7Q06707 132 aa5.96□□□□□ -1.46
RPN11YFR004W RSB1Q08417 382 aa5.96□□□□□ -1.46
RPN11YFR004W COX5AP00424 153 aa5.95□□□□□ -1.46
RPN11YFR004W HIS1P00498 297 aaKnown RBP5.95□□□□□ -1.46
RPN11YFR004W TUB1P09733 447 aaKnown RBP5.95□□□□□ -1.46
RPN11YFR004W GLN4P13188 809 aaKnown RBP5.95□□□□□ -1.46
RPN11YFR004W SEC63P14906 663 aa5.95□□□□□ -1.46
RPN11YFR004W SNF5P18480 905 aa5.95□□□□□ -1.46
RPN11YFR004W ART10P18634 518 aaKnown RBP5.95□□□□□ -1.46
RPN11YFR004W ERG6P25087 383 aaKnown RBP5.95□□□□□ -1.46
RPN11YFR004W ARE1P25628 610 aa5.95□□□□□ -1.46
RPN11YFR004W BEM3P32873 1128 aa5.95□□□□□ -1.46
RPN11YFR004W PTH2P34222 208 aa5.95□□□□□ -1.46
RPN11YFR004W YHR182WP38870 785 aa5.95□□□□□ -1.46
RPN11YFR004W RGA1P39083 1007 aa5.95□□□□□ -1.46
RPN11YFR004W EDC3P39998 551 aaKnown RBP5.95□□□□□ -1.46
RPN11YFR004W RTT101P47050 842 aa5.95□□□□□ -1.46
RPN11YFR004W AQR1P53943 586 aa5.95□□□□□ -1.46
RPN11YFR004W RLI1Q03195 608 aaKnown RBP5.95□□□□□ -1.46
RPN11YFR004W UGO1Q03327 502 aa5.95□□□□□ -1.46
RPN11YFR004W TRS31Q03337 283 aa5.95□□□□□ -1.46
RPN11YFR004W HPT1Q04178 221 aaKnown RBP5.95□□□□□ -1.46
RPN11YFR004W GLO2Q05584 274 aa5.95□□□□□ -1.46
RPN11YFR004W SEC10Q06245 871 aa5.95□□□□□ -1.46
RPN11YFR004W SYT1Q06836 1226 aa5.95□□□□□ -1.46
RPN11YFR004W YDL073WQ07454 984 aa5.95□□□□□ -1.46
RPN11YFR004W SAM4Q08985 325 aaKnown RBP5.95□□□□□ -1.46
RPN11YFR004W GLO4Q12320 285 aa5.95□□□□□ -1.46
RPN11YFR004W ATP2P00830 511 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W MIS1P09440 975 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W NSP1P14907 823 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W URA4P20051 364 aa5.94□□□□□ -1.46
RPN11YFR004W TFC1P32367 649 aa5.94□□□□□ -1.46
RPN11YFR004W ZUO1P32527 433 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W SRP101P32916 621 aa5.94□□□□□ -1.46
RPN11YFR004W GLY1P37303 387 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W SLM4P38247 162 aa5.94□□□□□ -1.46
RPN11YFR004W YHR078WP38799 552 aa5.94□□□□□ -1.46
RPN11YFR004W NPT1P39683 429 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W PDS1P40316 373 aaPredicted RBP5.94□□□□□ -1.46
RPN11YFR004W SER33P40510 469 aa5.94□□□□□ -1.46
RPN11YFR004W CCT7P42943 550 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W COP1P53622 1201 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W ASI2P53895 289 aa5.94□□□□□ -1.46
RPN11YFR004W YNL010WP53981 241 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W ENT5Q03769 411 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W RPN9Q04062 393 aaKnown RBP5.94□□□□□ -1.46
RPN11YFR004W SPC2Q04969 178 aa5.94□□□□□ -1.46
RPN11YFR004W ESA1Q08649 445 aa5.94□□□□□ -1.46
RPN11YFR004W MCH5Q08777 521 aa5.94□□□□□ -1.46
RPN11YFR004W PER33Q12144 273 aa5.94□□□□□ -1.46
RPN11YFR004W UBX3Q12229 455 aa5.94□□□□□ -1.46
RPN11YFR004W TAF3Q12297 353 aa5.94□□□□□ -1.46
RPN11YFR004W YIL046W-AQ3E7Z4 54 aa5.94□□□□□ -1.46
RPN11YFR004W AFI1Q99222 893 aa5.94□□□□□ -1.46
RPN11YFR004W HFA1P32874 2273 aa5.94□□□□□ -1.46
RPN11YFR004W GAL4P04386 881 aa5.93□□□□□ -1.46
RPN11YFR004W AEP1P32493 518 aa5.93□□□□□ -1.46
RPN11YFR004W TYE7P33122 291 aaPredicted RBP5.93□□□□□ -1.46
RPN11YFR004W CBF5P33322 483 aaKnown RBP RIP-Chip data5.93□□□□□ -1.46not detected
RPN11YFR004W PXA2P34230 853 aa5.93□□□□□ -1.46
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms