RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	SYN8	P31377	255 aa		3.23	□□□□□ -1.89
RSM28	YDR494W	MTR2	P34232	184 aa	Known RBP	3.23	□□□□□ -1.89
RSM28	YDR494W	NUP133	P36161	1157 aa		3.23	□□□□□ -1.89
RSM28	YDR494W	NOP4	P37838	685 aa	Known RBP	3.23	□□□□□ -1.89
RSM28	YDR494W	RPL32	P38061	130 aa	Known RBP	3.23	□□□□□ -1.89
RSM28	YDR494W	FLC2	P39719	783 aa		3.23	□□□□□ -1.89
RSM28	YDR494W	AXL1	P40851	1208 aa		3.23	□□□□□ -1.89
RSM28	YDR494W	UPF3	P48412	387 aa	Known RBP	3.23	□□□□□ -1.89
RSM28	YDR494W	DSD1	P53095	428 aa		3.23	□□□□□ -1.89
RSM28	YDR494W	YVH1	Q02256	364 aa	Known RBP	3.23	□□□□□ -1.89
RSM28	YDR494W	MSS11	Q03825	758 aa		3.23	□□□□□ -1.89
RSM28	YDR494W	BUD21	Q08492	214 aa	Predicted RBP	3.23	□□□□□ -1.89
RSM28	YDR494W	YPL272C	Q08984	517 aa		3.23	□□□□□ -1.89
RSM28	YDR494W	NMD4	Q12129	218 aa		3.23	□□□□□ -1.89
RSM28	YDR494W	ARP6	Q12509	438 aa		3.23	□□□□□ -1.89
RSM28	YDR494W	EST1	P17214	699 aa	Predicted RBP	3.22	□□□□□ -1.89
RSM28	YDR494W	PEP3	P27801	918 aa		3.22	□□□□□ -1.89
RSM28	YDR494W	ERG1	P32476	496 aa	Known RBP	3.22	□□□□□ -1.89
RSM28	YDR494W	YJL068C	P40363	299 aa		3.22	□□□□□ -1.89
RSM28	YDR494W	DIM1	P41819	318 aa	Known RBP	3.22	□□□□□ -1.89
RSM28	YDR494W	APT1	P49435	187 aa	Known RBP	3.22	□□□□□ -1.89
RSM28	YDR494W	TDA7	P53882	636 aa	Predicted RBP	3.22	□□□□□ -1.89
RSM28	YDR494W	YPL014W	Q02606	381 aa		3.22	□□□□□ -1.89
RSM28	YDR494W	FMP45	Q07651	309 aa		3.22	□□□□□ -1.89
RSM28	YDR494W	CDC45	Q08032	650 aa		3.22	□□□□□ -1.89
RSM28	YDR494W	SGS1	P35187	1447 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	MRS3	P10566	314 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	TYR1	P20049	452 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	SUI2	P20459	304 aa	Known RBP	3.21	□□□□□ -1.9
RSM28	YDR494W	ACH1	P32316	526 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	SEF1	P34228	1148 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	YKL023W	P36103	277 aa	Known RBP	3.21	□□□□□ -1.9
RSM28	YDR494W	SPC34	P36131	295 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	AVT5	P38176	459 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	GUF1	P46943	645 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	SNG1	P46950	547 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	VID30	P53076	958 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	YGL082W	P53155	381 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	YGR126W	P53274	230 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	IPI3	P53877	555 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	DIC1	Q06143	298 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	YEH1	Q07804	573 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	SDH5	Q08230	162 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	RCN2	Q12044	265 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	YPT6	Q99260	215 aa		3.21	□□□□□ -1.9
RSM28	YDR494W	MRP13	P12686	339 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	CBS2	P14905	389 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	ART10	P18634	518 aa	Known RBP	3.2	□□□□□ -1.9
RSM28	YDR494W	RPS2	P25443	254 aa	Known RBP	3.2	□□□□□ -1.9
RSM28	YDR494W	SGF29	P25554	259 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	LOS1	P33418	1100 aa	Predicted RBP	3.2	□□□□□ -1.9
RSM28	YDR494W	YNK1	P36010	153 aa	Known RBP	3.2	□□□□□ -1.9
RSM28	YDR494W	REG2	P38232	338 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	MDM31	P38880	579 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	CCT6	P39079	546 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	CIN4	P39110	191 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	ALG5	P40350	334 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	MRX6	P48564	524 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	SUB1	P54000	292 aa	Known RBP	3.2	□□□□□ -1.9
RSM28	YDR494W	SHR3	Q02774	210 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	MSC1	Q03104	513 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	GLO2	Q05584	274 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	YDL057W	Q07379	328 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	YEH2	Q07950	538 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	CTI6	Q08923	506 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	PDH1	Q12428	516 aa	Known RBP	3.2	□□□□□ -1.9
RSM28	YDR494W	YJR112W-A	Q3E743	109 aa		3.2	□□□□□ -1.9
RSM28	YDR494W	REV1	P12689	985 aa		3.19	□□□□□ -1.9
RSM28	YDR494W	PEP5	P12868	1029 aa		3.19	□□□□□ -1.9
RSM28	YDR494W	CBS1	P14066	229 aa		3.19	□□□□□ -1.9
RSM28	YDR494W	OLE1	P21147	510 aa	Known RBP	3.19	□□□□□ -1.9
RSM28	YDR494W	SEC62	P21825	274 aa		3.19	□□□□□ -1.9
RSM28	YDR494W	VPS17	P32913	551 aa		3.19	□□□□□ -1.9
RSM28	YDR494W	TIF3	P34167	436 aa	Known RBP	3.19	□□□□□ -1.9
RSM28	YDR494W	YER130C	P39959	443 aa		3.19	□□□□□ -1.9
RSM28	YDR494W	SAM50	P53969	484 aa		3.19	□□□□□ -1.9
RSM28	YDR494W	RHO4	Q00246	291 aa		3.19	□□□□□ -1.9
RSM28	YDR494W	RBA50	Q04418	439 aa		3.19	□□□□□ -1.9
RSM28	YDR494W	GCN4	P03069	281 aa		3.18	□□□□□ -1.9
RSM28	YDR494W	IMP2'	P32351	346 aa		3.18	□□□□□ -1.9
RSM28	YDR494W	IMD4	P50094	524 aa	Known RBP	3.18	□□□□□ -1.9
RSM28	YDR494W	YGR066C	P53242	292 aa		3.18	□□□□□ -1.9
RSM28	YDR494W	BUD32	P53323	261 aa		3.18	□□□□□ -1.9
RSM28	YDR494W	BOR1	P53838	576 aa		3.18	□□□□□ -1.9
RSM28	YDR494W	VPS38	Q05919	439 aa		3.18	□□□□□ -1.9
RSM28	YDR494W	ECM15	P35195	104 aa		3.17	□□□□□ -1.9
RSM28	YDR494W	TCD2	P36101	447 aa	Known RBP	3.17	□□□□□ -1.9
RSM28	YDR494W	YTA12	P40341	825 aa		3.17	□□□□□ -1.9
RSM28	YDR494W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	3.17	□□□□□ -1.9	not detected
RSM28	YDR494W	ALT2	P52892	507 aa		3.17	□□□□□ -1.9
RSM28	YDR494W	RBG2	P53295	368 aa	Known RBP	3.17	□□□□□ -1.9
RSM28	YDR494W	VPS75	P53853	264 aa		3.17	□□□□□ -1.9
RSM28	YDR494W	RPT6	Q01939	405 aa	Known RBP	3.17	□□□□□ -1.9
RSM28	YDR494W	HCR1	Q05775	265 aa	Known RBP	3.17	□□□□□ -1.9
RSM28	YDR494W	THI20	Q08224	551 aa		3.17	□□□□□ -1.9
RSM28	YDR494W	AVL9	Q12500	764 aa		3.17	□□□□□ -1.9
RSM28	YDR494W	HSH49	Q99181	213 aa	Predicted RBP	3.17	□□□□□ -1.9
RSM28	YDR494W	GAL80	P04387	435 aa		3.16	□□□□□ -1.9
RSM28	YDR494W	APE1	P14904	514 aa		3.16	□□□□□ -1.9
RSM28	YDR494W	YBR225W	P38321	900 aa		3.16	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 19.3 ms