RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	HMF1	P40037	129 aa	Known RBP	4.88	□□□□□ -1.63
CDC28	YBR160W	TOK1	P40310	691 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	SEC28	P40509	296 aa	Known RBP	4.88	□□□□□ -1.63
CDC28	YBR160W	YIL054W	P40524	105 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	RIP-Chip
CDC28	YBR160W	MRK1	P50873	501 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	PSP1	P50896	841 aa	Known RBP	4.88	□□□□□ -1.63
CDC28	YBR160W	YGL039W	P53183	348 aa	Known RBP	4.88	□□□□□ -1.63
CDC28	YBR160W	CUL3	P53202	744 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	BUD32	P53323	261 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	YNL146W	P53906	100 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	GPD1	Q00055	391 aa	Known RBP	4.88	□□□□□ -1.63
CDC28	YBR160W	ENA2	Q01896	1091 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	SWP1	Q02795	286 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	RNY1	Q02933	434 aa	Known RBP	4.88	□□□□□ -1.63
CDC28	YBR160W	HSP31	Q04432	237 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	MGR3	Q04472	501 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	GLO2	Q05584	274 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	TMA10	Q06177	86 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	ECM7	Q06200	448 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	GMC2	Q06201	188 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	ISA1	Q07821	250 aa	Predicted RBP	4.88	□□□□□ -1.63
CDC28	YBR160W	ENT4	Q07872	247 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	YOL019W	Q08157	551 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	THI20	Q08224	551 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	UIP4	Q08926	304 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	RKM1	Q08961	583 aa	Predicted RBP	4.88	□□□□□ -1.63
CDC28	YBR160W	ATG34	Q12292	412 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	TMA17	Q12513	150 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	ENA5	Q12691	1091 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	BRR1	Q99177	341 aa	Predicted RBP	4.88	□□□□□ -1.63
CDC28	YBR160W	IZH4	Q99393	312 aa		4.88	□□□□□ -1.63
CDC28	YBR160W	CDC9	P04819	755 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	CMK2	P22517	447 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	VPS3	P23643	1011 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	ERG6	P25087	383 aa	Known RBP	4.87	□□□□□ -1.63
CDC28	YBR160W	POL4	P25615	582 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	BRF1	P29056	596 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	CSE1	P33307	960 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	YKL222C	P35995	705 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	OCT1	P35999	772 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	NOP4	P37838	685 aa	Known RBP	4.87	□□□□□ -1.63
CDC28	YBR160W	APN2	P38207	520 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	YHR112C	P38716	378 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	CYC2	P38909	366 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	LYS9	P38999	446 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	SEO1	P39709	593 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	URM1	P40554	99 aa	Predicted RBP	4.87	□□□□□ -1.63
CDC28	YBR160W	YJL132W	P47014	750 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	TY4A-J	P47023	414 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	IMA1	P53051	589 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	RMR1	P53060	241 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	MND1	P53102	219 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	LSG1	P53145	640 aa	Known RBP	4.87	□□□□□ -1.63
CDC28	YBR160W	YGL036W	P53185	909 aa	Predicted RBP	4.87	□□□□□ -1.63
CDC28	YBR160W	ARC35	P53731	342 aa	Known RBP	4.87	□□□□□ -1.63
CDC28	YBR160W	YML037C	Q03703	340 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	PLP1	Q04004	230 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	YDR514C	Q04408	483 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	URC2	Q04411	772 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	GAL83	Q04739	417 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	YPR196W	Q06595	470 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	YLR413W	Q06689	675 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	MUM3	Q08750	479 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	RCN2	Q12044	265 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	APC9	Q12107	265 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	HOS1	Q12214	470 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	LDB17	Q12342	491 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	VPS5	Q92331	675 aa		4.87	□□□□□ -1.63
CDC28	YBR160W	MF(ALPHA)1	P01149	165 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	CBP2	P03874	630 aa	Predicted RBP	4.86	□□□□□ -1.63
CDC28	YBR160W	RPS9B	P05755	195 aa	Known RBP	4.86	□□□□□ -1.63
CDC28	YBR160W	RHO1	P06780	209 aa	Known RBP	4.86	□□□□□ -1.63
CDC28	YBR160W	BCY1	P07278	416 aa	Known RBP	4.86	□□□□□ -1.63
CDC28	YBR160W	RAP1	P11938	827 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	HMG2	P12684	1045 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	UGA1	P17649	471 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	PMA2	P19657	947 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	UBA1	P22515	1024 aa	Known RBP	4.86	□□□□□ -1.63
CDC28	YBR160W	DMC1	P25453	334 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	GID7	P25569	745 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	PHO91	P27514	894 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	PMI40	P29952	429 aa	Known RBP	4.86	□□□□□ -1.63
CDC28	YBR160W	SMI1	P32566	505 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	GDA1	P32621	518 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	FRE1	P32791	686 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	PEX5	P35056	612 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	MCR1	P36060	302 aa	Known RBP	4.86	□□□□□ -1.63
CDC28	YBR160W	TVP38	P36164	337 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	SKG1	P36169	355 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	RFS1	P38234	210 aa	Known RBP	4.86	□□□□□ -1.63
CDC28	YBR160W	IST2	P38250	946 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	MMS4	P38257	691 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	FTH1	P38310	465 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	YHB1	P39676	399 aa	Known RBP	4.86	□□□□□ -1.63
CDC28	YBR160W	ECM10	P39987	644 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	AVT6	P40074	448 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	DSE1	P40077	573 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	YFL012W	P43580	148 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	ASN2	P49090	572 aa	Known RBP	4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 47.6 ms