RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 RMDN3Q96TC7 470 aa5.56□□□□□ -1.52
SCN1A-218ENST00000640036 WDR11Q9BZH6 1224 aa5.56□□□□□ -1.52
SCN1A-218ENST00000640036 LIMCH1Q9UPQ0 1083 aa5.56□□□□□ -1.52
SCN1A-218ENST00000640036 GIPC1O14908 333 aa5.56□□□□□ -1.52
SCN1A-218ENST00000640036 NUCB1Q02818 461 aa5.56□□□□□ -1.52
SCN1A-218ENST00000640036 NOP9Q86U38 636 aaKnown RBP5.56□□□□□ -1.52
SCN1A-218ENST00000640036 PPFIBP2Q8ND30 876 aa5.56□□□□□ -1.52
SCN1A-218ENST00000640036 TEX13BQ9BXU2 312 aa5.56□□□□□ -1.52
SCN1A-218ENST00000640036 SCAND2PQ9GZW5 306 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-218ENST00000640036 RPAP3Q9H6T3 665 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-218ENST00000640036 GLI2P10070 1586 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 GOLGA6CA6NDK9 693 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 GOLGA6BA6NDN3 693 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 GOLGA6DP0CG33 693 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 SH3BGRP55822 239 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 OPTNQ96CV9 577 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 GOLGA6AQ9NYA3 693 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 PCDHB9Q9Y5E1 797 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 PLA2R1Q13018 1463 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CDK12Q9NYV4 1490 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 TMCO5BA8MYB1 307 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 FARP2O94887 1054 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CYP2E1P05181 493 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CCDC192P0DO97 292 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 SFPQP23246 707 aaKnown RBP eCLIP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 PLCD1P51178 756 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CACNB3P54284 484 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 HERC4Q5GLZ8 1057 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 FAM47AQ5JRC9 791 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CYP4A22Q5TCH4 519 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 ARMCX2Q7L311 632 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 PDCL2Q8N4E4 241 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 TTC1Q99614 292 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 IPPQ9Y573 584 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 USP42Q9H9J4 1324 aaKnown RBP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 ABCA9Q8IUA7 1624 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 SYCE3A1L190 88 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 ZW10O43264 779 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 AMHP03971 560 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 NT5C2P49902 561 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 MYO1EQ12965 1108 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 PRR16Q569H4 304 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 TBC1D31Q96DN5 1066 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 ANKRD36BP1Q96IX9 119 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 DBNDD2Q9BQY9 259 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 TNNQ9UQP3 1299 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 TECPR2O15040 1411 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 NCAM2O15394 837 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CYBBP04839 570 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 MYZAPP0CAP1 466 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 PPP1R2P41236 205 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 ST8SIA6P61647 398 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CNTRLQ7Z7A1 2325 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CTU1Q7Z7A3 348 aaKnown RBP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 NT5C3AQ9H0P0 336 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 PCDHA12Q9UN75 941 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 MINPP1Q9UNW1 487 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 TTLL3Q9Y4R7 772 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CALUO43852 315 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 TXKP42681 527 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 MYL7Q01449 175 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 PLCB3Q01970 1234 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 RASGRF1Q13972 1273 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 IRAK1BP1Q5VVH5 260 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 IL17REQ8NFR9 667 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CCDC26Q8TAB7 109 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 BRF1Q92994 677 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 SPATA33Q96N06 139 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 ZNF577Q9BSK1 485 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 DACT1Q9NYF0 836 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 PCDHB13Q9Y5F0 798 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 ADGRB3O60242 1522 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 KDM3AQ9Y4C1 1321 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 SMCO2A6NFE2 343 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CYP27B1O15528 508 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 DEXIO95424 95 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 LRG1P02750 347 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 TXNP10599 105 aaKnown RBP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 TRIM27P14373 513 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 CPB1P15086 417 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 PHKA2P46019 1235 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 ARHGAP4P98171 946 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 LRCH2Q5VUJ6 765 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 ACSF2Q96CM8 615 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-218ENST00000640036 FAM169AQ9Y6X4 670 aa5.55□□□□□ -1.52
SCN1A-218ENST00000640036 RGL2O15211 777 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 HEXIM1O94992 359 aaKnown RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 MOCS3O95396 460 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 GH1P01241 217 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 BFSP1Q12934 665 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 PDZD4Q76G19 769 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 CCDC89Q8N998 374 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 TSKSQ9UJT2 592 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 USP19O94966 1318 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 BICDL2A1A5D9 508 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 PPARAQ07869 468 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 PRAMEF18Q5VWM3 479 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 CYP4F22Q6NT55 531 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 TMCO3Q6UWJ1 677 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 CEP68Q76N32 757 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms