RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ERICH2A1L162 156 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 IFIT3O14879 490 aaKnown RBP18.69■□□□□ 0.58
BRCA1-228ENST00000618469 SLC27A2O14975 620 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 SART3Q15020 963 aaKnown RBP18.69■□□□□ 0.58
BRCA1-228ENST00000618469 SHHQ15465 462 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 ASPRV1Q53RT3 343 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 C9orf50Q5SZB4 431 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 ERICH6BQ5W0A0 696 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 ANO1Q5XXA6 986 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 CREB3L3Q68CJ9 461 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 FAM109BQ6ICB4 259 aaPredicted RBP18.69■□□□□ 0.58
BRCA1-228ENST00000618469 CHST3Q7LGC8 479 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 MB21D2Q8IYB1 491 aaPredicted RBP18.69■□□□□ 0.58
BRCA1-228ENST00000618469 TRERF1Q96PN7 1200 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 A1CFQ9NQ94 594 aaKnown RBP18.69■□□□□ 0.58
BRCA1-228ENST00000618469 DDX20Q9UHI6 824 aaKnown RBP18.69■□□□□ 0.58
BRCA1-228ENST00000618469 ATP11BQ9Y2G3 1177 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 LTBP2Q14767 1821 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 LRRC37A2A6NM11 1700 aa18.69■□□□□ 0.58
BRCA1-228ENST00000618469 LCTP09848 1927 aa18.68■□□□□ 0.58
BRCA1-228ENST00000618469 DNAJC25-GNG10A0A024R161 153 aa18.68■□□□□ 0.58
BRCA1-228ENST00000618469 MYCNP04198 464 aaPredicted RBP18.68■□□□□ 0.58
BRCA1-228ENST00000618469 PARP1P09874 1014 aaKnown RBP18.68■□□□□ 0.58
BRCA1-228ENST00000618469 ANTXR2P58335 489 aa18.68■□□□□ 0.58
BRCA1-228ENST00000618469 RTP1P59025 263 aa18.68■□□□□ 0.58
BRCA1-228ENST00000618469 WTAPQ15007 396 aa18.68■□□□□ 0.58
BRCA1-228ENST00000618469 MUM1L1Q5H9M0 696 aa18.68■□□□□ 0.58
BRCA1-228ENST00000618469 MAFAQ8NHW3 353 aaPredicted RBP18.68■□□□□ 0.58
BRCA1-228ENST00000618469 MYLIPQ8WY64 445 aa18.68■□□□□ 0.58
BRCA1-228ENST00000618469 TINF2Q9BSI4 451 aa18.68■□□□□ 0.58
BRCA1-228ENST00000618469 UBA5Q9GZZ9 404 aa18.68■□□□□ 0.58
BRCA1-228ENST00000618469 SMCHD1A6NHR9 2005 aa18.67■□□□□ 0.58
BRCA1-228ENST00000618469 MYH6P13533 1939 aa18.67■□□□□ 0.58
BRCA1-228ENST00000618469 MSCO60682 206 aa18.67■□□□□ 0.58
BRCA1-228ENST00000618469 TMEM67Q5HYA8 995 aa18.67■□□□□ 0.58
BRCA1-228ENST00000618469 PRAMEF19Q5SWL8 479 aa18.67■□□□□ 0.58
BRCA1-228ENST00000618469 GJC2Q5T442 439 aaPredicted RBP18.67■□□□□ 0.58
BRCA1-228ENST00000618469 SEMA6BQ9H3T3 888 aa18.67■□□□□ 0.58
BRCA1-228ENST00000618469 SENP2Q9HC62 589 aa18.67■□□□□ 0.58
BRCA1-228ENST00000618469 PRDM5Q9NQX1 630 aaPredicted RBP18.67■□□□□ 0.58
BRCA1-228ENST00000618469 PRKAG2Q9UGJ0 569 aa18.67■□□□□ 0.58
BRCA1-228ENST00000618469 MCM3APO60318 1980 aa18.67■□□□□ 0.58
BRCA1-228ENST00000618469 DHX16O60231 1041 aaKnown RBP18.66■□□□□ 0.58
BRCA1-228ENST00000618469 NECTIN1Q15223 517 aa18.66■□□□□ 0.58
BRCA1-228ENST00000618469 CDC37Q16543 378 aaPredicted RBP18.66■□□□□ 0.58
BRCA1-228ENST00000618469 NSMFQ6X4W1 530 aa18.66■□□□□ 0.58
BRCA1-228ENST00000618469 WDR19Q8NEZ3 1342 aa18.66■□□□□ 0.58
BRCA1-228ENST00000618469 SEPT4O43236 478 aa18.65■□□□□ 0.58
BRCA1-228ENST00000618469 PRC1O43663 620 aa18.65■□□□□ 0.58
BRCA1-228ENST00000618469 RNF20Q5VTR2 975 aa18.65■□□□□ 0.58
BRCA1-228ENST00000618469 ZNF467Q7Z7K2 595 aaPredicted RBP18.65■□□□□ 0.58
BRCA1-228ENST00000618469 FGD4Q96M96 766 aa18.65■□□□□ 0.58
BRCA1-228ENST00000618469 CNPY2Q9Y2B0 182 aa18.65■□□□□ 0.58
BRCA1-228ENST00000618469 SYNGAP1Q96PV0 1343 aa18.65■□□□□ 0.58
BRCA1-228ENST00000618469 NFIBO00712 420 aa18.64■□□□□ 0.57
BRCA1-228ENST00000618469 CNTN2Q02246 1040 aa18.64■□□□□ 0.57
BRCA1-228ENST00000618469 USH1GQ495M9 461 aa18.64■□□□□ 0.57
BRCA1-228ENST00000618469 ADGRF4Q8IZF3 695 aa18.64■□□□□ 0.57
BRCA1-228ENST00000618469 STAG2Q8N3U4 1231 aa18.64■□□□□ 0.57
BRCA1-228ENST00000618469 MSL3Q8N5Y2 521 aaKnown RBP18.64■□□□□ 0.57
BRCA1-228ENST00000618469 FAM133AQ8N9E0 248 aa18.64■□□□□ 0.57
BRCA1-228ENST00000618469 BADQ92934 168 aa18.64■□□□□ 0.57
BRCA1-228ENST00000618469 TTYH1Q9H313 450 aaPredicted RBP18.64■□□□□ 0.57
BRCA1-228ENST00000618469 CYP39A1Q9NYL5 469 aa18.64■□□□□ 0.57
BRCA1-228ENST00000618469 NRBP1Q9UHY1 535 aa18.64■□□□□ 0.57
BRCA1-228ENST00000618469 ZHX1Q9UKY1 873 aaPredicted RBP18.64■□□□□ 0.57
BRCA1-228ENST00000618469 PNMA2Q9UL42 364 aa18.64■□□□□ 0.57
BRCA1-228ENST00000618469 MCM5P33992 734 aa18.63■□□□□ 0.57
BRCA1-228ENST00000618469 COL9A3Q14050 684 aaPredicted RBP18.63■□□□□ 0.57
BRCA1-228ENST00000618469 GRM4Q14833 912 aa18.63■□□□□ 0.57
BRCA1-228ENST00000618469 MAMDC4Q6UXC1 1216 aa18.63■□□□□ 0.57
BRCA1-228ENST00000618469 ARMCX2Q7L311 632 aa18.63■□□□□ 0.57
BRCA1-228ENST00000618469 GPHNQ9NQX3 736 aaPredicted RBP18.63■□□□□ 0.57
BRCA1-228ENST00000618469 MAD2L2Q9UI95 211 aa18.63■□□□□ 0.57
BRCA1-228ENST00000618469 PTPDC1A2A3K4 754 aa18.62■□□□□ 0.57
BRCA1-228ENST00000618469 KLRF2D3W0D1 207 aa18.62■□□□□ 0.57
BRCA1-228ENST00000618469 ZNF865P0CJ78 1059 aaPredicted RBP18.62■□□□□ 0.57
BRCA1-228ENST00000618469 QRICH1Q2TAL8 776 aa18.62■□□□□ 0.57
BRCA1-228ENST00000618469 SLC30A10Q6XR72 485 aa18.62■□□□□ 0.57
BRCA1-228ENST00000618469 SH3RF1Q7Z6J0 888 aa18.62■□□□□ 0.57
BRCA1-228ENST00000618469 CATIPQ7Z7H3 387 aa18.62■□□□□ 0.57
BRCA1-228ENST00000618469 IGDCC4Q8TDY8 1250 aa18.62■□□□□ 0.57
BRCA1-228ENST00000618469 FERMT2Q96AC1 680 aa18.62■□□□□ 0.57
BRCA1-228ENST00000618469 LY9Q9HBG7 655 aa18.62■□□□□ 0.57
BRCA1-228ENST00000618469 PRDM6Q9NQX0 595 aa18.62■□□□□ 0.57
BRCA1-228ENST00000618469 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.62■□□□□ 0.57
BRCA1-228ENST00000618469 ASTN1O14525 1302 aa18.61■□□□□ 0.57
BRCA1-228ENST00000618469 SOWAHBA6NEL2 793 aa18.61■□□□□ 0.57
BRCA1-228ENST00000618469 SH2B2O14492 632 aaPredicted RBP18.61■□□□□ 0.57
BRCA1-228ENST00000618469 SNAI1O95863 264 aaPredicted RBP18.61■□□□□ 0.57
BRCA1-228ENST00000618469 AKR1A1P14550 325 aa18.61■□□□□ 0.57
BRCA1-228ENST00000618469 TROAPQ12815 778 aa18.61■□□□□ 0.57
BRCA1-228ENST00000618469 TRIM60Q495X7 471 aa18.61■□□□□ 0.57
BRCA1-228ENST00000618469 CCDC144CPQ8IYA2 1237 aa18.61■□□□□ 0.57
BRCA1-228ENST00000618469 ZNF654Q8IZM8 581 aa18.61■□□□□ 0.57
BRCA1-228ENST00000618469 NUP133Q8WUM0 1156 aa18.61■□□□□ 0.57
BRCA1-228ENST00000618469 CLEC4DQ8WXI8 215 aa18.61■□□□□ 0.57
BRCA1-228ENST00000618469 LENG1Q96BZ8 264 aaPredicted RBP18.61■□□□□ 0.57
BRCA1-228ENST00000618469 MYL10Q9BUA6 226 aa18.61■□□□□ 0.57
BRCA1-228ENST00000618469 JMJD4Q9H9V9 463 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms