RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 EHBP1Q8NDI1 1231 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 P3H4Q92791 437 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 CDC5LQ99459 802 aaKnown RBP11.33□□□□□ -0.6
VPS39-214ENST00000614932 UBE2OQ9C0C9 1292 aaKnown RBP11.33□□□□□ -0.6
VPS39-214ENST00000614932 HSD3B7Q9H2F3 369 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 L3MBTL1Q9Y468 752 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 GOLGB1Q14789 3259 aaKnown RBP11.33□□□□□ -0.6
VPS39-214ENST00000614932 UBR2Q8IWV8 1755 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 GPR75-ASB3A0A0A6YYF3 556 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 DPPA5A6NC42 116 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 WTIPA6NIX2 430 aaPredicted RBP11.32□□□□□ -0.6
VPS39-214ENST00000614932 CIAO1O76071 339 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 CSF1RP07333 972 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 RPL13P26373 211 aaKnown RBP11.32□□□□□ -0.6
VPS39-214ENST00000614932 PHKA1P46020 1223 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 CRKLP46109 303 aaKnown RBP11.32□□□□□ -0.6
VPS39-214ENST00000614932 PTF1AQ7RTS3 328 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 AATFQ9NY61 560 aaKnown RBP eCLIP11.32□□□□□ -0.6
VPS39-214ENST00000614932 HDAC6Q9UBN7 1215 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 FAM184BQ9ULE4 1060 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 ASB3Q9Y575 518 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 ADGRG1Q9Y653 693 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 NUP188Q5SRE5 1749 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 DESP17661 470 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 CYP11B2P19099 503 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 SEC24CP53992 1094 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 ADKP55263 362 aaKnown RBP11.32□□□□□ -0.6
VPS39-214ENST00000614932 GUCY1A3Q02108 690 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 TMED1Q13445 227 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 ITPK1Q13572 414 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 ANKRD1Q15327 319 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 FAM98CQ17RN3 349 aaKnown RBP11.32□□□□□ -0.6
VPS39-214ENST00000614932 NCAPH2Q6IBW4 605 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 HIBCHQ6NVY1 386 aaPredicted RBP11.32□□□□□ -0.6
VPS39-214ENST00000614932 PHC3Q8NDX5 983 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 ARL8AQ96BM9 186 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 RNPC3Q96LT9 517 aaKnown RBP11.32□□□□□ -0.6
VPS39-214ENST00000614932 RUFY1Q96T51 708 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 FTOQ9C0B1 505 aaKnown RBP eCLIP11.32□□□□□ -0.6
VPS39-214ENST00000614932 PIDD1Q9HB75 910 aa11.32□□□□□ -0.6
VPS39-214ENST00000614932 KIF5BP33176 963 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 INHBCP55103 352 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 KRT32Q14532 448 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 CYFIP2Q96F07 1278 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 FAM167BQ9BTA0 163 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 GPR108Q9NPR9 543 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 HELLSQ9NRZ9 838 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 SH3TC1Q8TE82 1336 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 H3BQV1 296 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 ABLIM1O14639 778 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 PARP1P09874 1014 aaKnown RBP11.31□□□□□ -0.6
VPS39-214ENST00000614932 GHRP10912 638 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 TRIM28Q13263 835 aaKnown RBP11.31□□□□□ -0.6
VPS39-214ENST00000614932 PABPC4Q13310 644 aaKnown RBP eCLIP11.31□□□□□ -0.6
VPS39-214ENST00000614932 MTF1Q14872 753 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 PPP1R7Q15435 360 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 SLC9C2Q5TAH2 1124 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 IFFO2Q5TF58 517 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 EMC10Q5UCC4 262 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 ALS2CLQ60I27 953 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 GSPT2Q8IYD1 628 aaKnown RBP11.31□□□□□ -0.6
VPS39-214ENST00000614932 NKX2-3Q8TAU0 364 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 AENQ8WTP8 325 aaKnown RBP11.31□□□□□ -0.6
VPS39-214ENST00000614932 MAIP1Q8WWC4 291 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 E7EVH7 732 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 FGAP02671 866 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 MYBL1P10243 752 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 PTPN21Q16825 1174 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 PABPC1LQ4VXU2 614 aaKnown RBP11.31□□□□□ -0.6
VPS39-214ENST00000614932 OTUD7BQ6GQQ9 843 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 INTS5Q6P9B9 1019 aaKnown RBP11.31□□□□□ -0.6
VPS39-214ENST00000614932 FMR1NBQ8N0W7 255 aaPredicted RBP11.31□□□□□ -0.6
VPS39-214ENST00000614932 PIH1D3Q9NQM4 214 aaKnown RBP11.31□□□□□ -0.6
VPS39-214ENST00000614932 GALNT8Q9NY28 637 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 TMEM98Q9Y2Y6 226 aa11.31□□□□□ -0.6
VPS39-214ENST00000614932 PALLDQ8WX93 1383 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 ROBO1Q9Y6N7 1651 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 LOC102724428A0A0B4J2F2 783 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 N4BP3O15049 544 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 FOXP2O15409 715 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 RXRAP19793 462 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 SIK1P57059 783 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 AMPD2Q01433 879 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 PRPF4BQ13523 1007 aaKnown RBP11.3□□□□□ -0.6
VPS39-214ENST00000614932 DHX32Q7L7V1 743 aaKnown RBP11.3□□□□□ -0.6
VPS39-214ENST00000614932 LCA5Q86VQ0 697 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 RNF168Q8IYW5 571 aaPredicted RBP11.3□□□□□ -0.6
VPS39-214ENST00000614932 AGAP11Q8TF27 550 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 NIP7Q9Y221 180 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS39-214ENST00000614932 WDR37Q9Y2I8 494 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 GPAA1O43292 621 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 PDE8AO60658 829 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 ZMYND10O75800 440 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 MBD4O95243 580 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 VIMP08670 466 aaKnown RBP11.3□□□□□ -0.6
VPS39-214ENST00000614932 MYL5Q02045 173 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 NNTQ13423 1086 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 CCDC80Q76M96 950 aa11.3□□□□□ -0.6
VPS39-214ENST00000614932 SND1Q7KZF4 910 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS39-214ENST00000614932 MRPS27Q92552 414 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms