RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ANKRD13CQ8N6S4 541 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 CCDC148Q8NFR7 591 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 FBXO18Q8NFZ0 1043 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 SHISA4Q96DD7 197 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 CFHR5Q9BXR6 569 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 VPS54Q9P1Q0 977 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 SLC25A27O95847 323 aa16.52■□□□□ 0.24
UPF1-211ENST00000600868 BCRP11274 1271 aa16.52■□□□□ 0.24
UPF1-211ENST00000600868 TRIM29Q14134 588 aa16.52■□□□□ 0.24
UPF1-211ENST00000600868 Q3C1V9 767 aa16.52■□□□□ 0.24
UPF1-211ENST00000600868 C17orf99Q6UX52 265 aa16.52■□□□□ 0.24
UPF1-211ENST00000600868 TEX2Q8IWB9 1127 aa16.52■□□□□ 0.24
UPF1-211ENST00000600868 MOV10L1Q9BXT6 1211 aaKnown RBP16.52■□□□□ 0.24
UPF1-211ENST00000600868 MAF1Q9H063 256 aa16.52■□□□□ 0.24
UPF1-211ENST00000600868 ZMYND12Q9H0C1 365 aa16.52■□□□□ 0.24
UPF1-211ENST00000600868 RIPK3Q9Y572 518 aa16.52■□□□□ 0.24
UPF1-211ENST00000600868 PEX10O60683 326 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 ALAS1P13196 640 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 TAL1P17542 331 aaPredicted RBP16.51■□□□□ 0.23
UPF1-211ENST00000600868 SYT1P21579 422 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 CALML3P27482 149 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 CCNA1P78396 465 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 KRT40Q6A162 431 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 GALNT17Q6IS24 598 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.51■□□□□ 0.23
UPF1-211ENST00000600868 DNAJC5GQ8N7S2 189 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 SHCBP1Q8NEM2 672 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 CHST13Q8NET6 341 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 TRERF1Q96PN7 1200 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 PHF20Q9BVI0 1012 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 GLT8D2Q9H1C3 349 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 GJB4Q9NTQ9 266 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 RNF186Q9NXI6 227 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 SMCHD1A6NHR9 2005 aa16.51■□□□□ 0.23
UPF1-211ENST00000600868 SMCO2A6NFE2 343 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 GNA11P29992 359 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 DDIT3P35638 169 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 FOSBP53539 338 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 NLRP5P59047 1200 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 MCF2L2Q86YR7 1114 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 SAMD3Q8N6K7 520 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 CLEC4DQ8WXI8 215 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 MROH8Q9H579 483 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 C6orf50Q9HD87 102 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 RIC8AQ9NPQ8 531 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 RNF146Q9NTX7 359 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 SAGE1Q9NXZ1 904 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 FBXO40Q9UH90 709 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 CPA4Q9UI42 421 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 KCNJ14Q9UNX9 436 aa16.5■□□□□ 0.23
UPF1-211ENST00000600868 H3BQV1 296 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 OPLAHO14841 1288 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 MMP1P03956 469 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 ERCC3P19447 782 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 MRPL12P52815 198 aaKnown RBP16.49■□□□□ 0.23
UPF1-211ENST00000600868 GHRHRQ02643 423 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 MAP2K1Q02750 393 aaPredicted RBP16.49■□□□□ 0.23
UPF1-211ENST00000600868 NPY5RQ15761 445 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 MUM1L1Q5H9M0 696 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 IFFO2Q5TF58 517 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 DAGLBQ8NCG7 672 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 BICD2Q8TD16 824 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 CUL5Q93034 780 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 ACAD9Q9H845 621 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 PSTPIP2Q9H939 334 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 HOMER2Q9NSB8 354 aa16.49■□□□□ 0.23
UPF1-211ENST00000600868 PIK3CDO00329 1044 aa16.48■□□□□ 0.23
UPF1-211ENST00000600868 NFIBO00712 420 aa16.48■□□□□ 0.23
UPF1-211ENST00000600868 STX6O43752 255 aa16.48■□□□□ 0.23
UPF1-211ENST00000600868 TRPA1O75762 1119 aa16.48■□□□□ 0.23
UPF1-211ENST00000600868 ADCY7P51828 1080 aa16.48■□□□□ 0.23
UPF1-211ENST00000600868 GUCY1B3Q02153 619 aa16.48■□□□□ 0.23
UPF1-211ENST00000600868 SAFBQ15424 915 aaKnown RBP eCLIP16.48■□□□□ 0.23
UPF1-211ENST00000600868 NCAPG2Q86XI2 1143 aa16.48■□□□□ 0.23
UPF1-211ENST00000600868 R3HDMLQ9H3Y0 253 aa16.48■□□□□ 0.23
UPF1-211ENST00000600868 MAP3K20Q9NYL2 800 aaKnown RBP16.48■□□□□ 0.23
UPF1-211ENST00000600868 PCDHA4Q9UN74 947 aa16.48■□□□□ 0.23
UPF1-211ENST00000600868 MEIS2O14770 477 aa16.47■□□□□ 0.23
UPF1-211ENST00000600868 TBC1D8O95759 1140 aa16.47■□□□□ 0.23
UPF1-211ENST00000600868 MAPK4P31152 587 aa16.47■□□□□ 0.23
UPF1-211ENST00000600868 KRT2P35908 639 aa16.47■□□□□ 0.23
UPF1-211ENST00000600868 BLIDQ8IZY5 108 aa16.47■□□□□ 0.23
UPF1-211ENST00000600868 PORCNQ9H237 461 aa16.47■□□□□ 0.23
UPF1-211ENST00000600868 BRMS1Q9HCU9 246 aa16.47■□□□□ 0.23
UPF1-211ENST00000600868 CIZ1Q9ULV3 898 aaPredicted RBP16.47■□□□□ 0.23
UPF1-211ENST00000600868 MTMR6Q9Y217 621 aa16.47■□□□□ 0.23
UPF1-211ENST00000600868 VPS37CA5D8V6 355 aaPredicted RBP16.46■□□□□ 0.23
UPF1-211ENST00000600868 GCOM1H8Y6P7 765 aaPredicted RBP16.46■□□□□ 0.23
UPF1-211ENST00000600868 M0R2N6 131 aa16.46■□□□□ 0.23
UPF1-211ENST00000600868 POLR2MP0CAP2 368 aa16.46■□□□□ 0.23
UPF1-211ENST00000600868 HSD17B4P51659 736 aa16.46■□□□□ 0.23
UPF1-211ENST00000600868 CCAR1Q8IX12 1150 aaKnown RBP16.46■□□□□ 0.23
UPF1-211ENST00000600868 DIS3L2Q8IYB7 885 aaKnown RBP16.46■□□□□ 0.23
UPF1-211ENST00000600868 FOXP1Q9H334 677 aaPredicted RBP16.46■□□□□ 0.23
UPF1-211ENST00000600868 EFCC1Q9HA90 598 aa16.46■□□□□ 0.23
UPF1-211ENST00000600868 RBBP6Q7Z6E9 1792 aaKnown RBP16.46■□□□□ 0.22
UPF1-211ENST00000600868 STRNO43815 780 aa16.45■□□□□ 0.22
UPF1-211ENST00000600868 CFBP00751 764 aa16.45■□□□□ 0.22
UPF1-211ENST00000600868 CLK2P49760 499 aaKnown RBP16.45■□□□□ 0.22
UPF1-211ENST00000600868 NUCB2P80303 420 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms