RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 NID2Q14112 1375 aa22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 CCDC69A6NI79 296 aa22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 OPLAHO14841 1288 aa22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 CAPN15O75808 1086 aa22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 MYCP01106 439 aaPredicted RBP22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 FUT2Q10981 343 aa22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 TOB2Q14106 344 aaPredicted RBP22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 RUFY3Q7L099 469 aa22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 SRBD1Q8N5C6 995 aaKnown RBP22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 SHISA4Q96DD7 197 aa22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 CYP39A1Q9NYL5 469 aa22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 SLC12A7Q9Y666 1083 aa22.71■■□□□ 1.23
SHKBP1-221ENST00000599833 PRKAR2AP13861 404 aaKnown RBP22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 SMARCA1P28370 1054 aa22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 CYP2C19P33261 490 aa22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 RGS19P49795 217 aa22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 EVCP57679 992 aa22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 UBXN2AP68543 259 aa22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 CNTN2Q02246 1040 aa22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 NFXL1Q6ZNB6 911 aa22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 PIGSQ96S52 555 aa22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 SPZ1Q9BXG8 430 aa22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 VAT1LQ9HCJ6 419 aa22.7■■□□□ 1.22
SHKBP1-221ENST00000599833 SOWAHBA6NEL2 793 aa22.69■■□□□ 1.22
SHKBP1-221ENST00000599833 ZBTB5O15062 677 aa22.69■■□□□ 1.22
SHKBP1-221ENST00000599833 CYBAP13498 195 aa22.69■■□□□ 1.22
SHKBP1-221ENST00000599833 PSMA5P28066 241 aa22.69■■□□□ 1.22
SHKBP1-221ENST00000599833 CCND3P30281 292 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-221ENST00000599833 ANAPC15P60006 121 aa22.69■■□□□ 1.22
SHKBP1-221ENST00000599833 TMTC3Q6ZXV5 915 aa22.69■■□□□ 1.22
SHKBP1-221ENST00000599833 CCDC144CPQ8IYA2 1237 aa22.69■■□□□ 1.22
SHKBP1-221ENST00000599833 FANCBQ8NB91 859 aa22.69■■□□□ 1.22
SHKBP1-221ENST00000599833 PURBQ96QR8 312 aaKnown RBP22.69■■□□□ 1.22
SHKBP1-221ENST00000599833 RPTORQ8N122 1335 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 CALM1P0DP23 149 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 CALM2P0DP24 149 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 CALM3P0DP25 149 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 GHRHRQ02643 423 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 APOBRQ0VD83 1088 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 USH1GQ495M9 461 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 MAMDC4Q6UXC1 1216 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 ZNF467Q7Z7K2 595 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 MICU3Q86XE3 530 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 CMTR1Q8N1G2 835 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 ANKRD35Q8N283 1001 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 TBC1D5Q92609 795 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 BRF1Q92994 677 aa22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 UPF3BQ9BZI7 483 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 BIN2Q9UBW5 565 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-221ENST00000599833 KLF18A0A0U1RQI7 1052 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 GJB1P08034 283 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 EN2P19622 333 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 CDC27P30260 824 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 KIF5BP33176 963 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 RCAN1P53805 252 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 SLC30A10Q6XR72 485 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 FBXO11Q86XK2 927 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 CTCFLQ8NI51 663 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 TINF2Q9BSI4 451 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 KATNBL1Q9H079 304 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 RNF208Q9H0X6 261 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 PNMA2Q9UL42 364 aa22.67■■□□□ 1.22
SHKBP1-221ENST00000599833 PFASO15067 1338 aa22.66■■□□□ 1.22
SHKBP1-221ENST00000599833 ABCB11O95342 1321 aa22.66■■□□□ 1.22
SHKBP1-221ENST00000599833 CNTNAP5Q8WYK1 1306 aa22.66■■□□□ 1.22
SHKBP1-221ENST00000599833 SNAI1O95863 264 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-221ENST00000599833 GJA8P48165 433 aa22.66■■□□□ 1.22
SHKBP1-221ENST00000599833 RGS22Q8NE09 1264 aa22.66■■□□□ 1.22
SHKBP1-221ENST00000599833 DDX11Q96FC9 970 aa22.66■■□□□ 1.22
SHKBP1-221ENST00000599833 CRISPLD2Q9H0B8 497 aa22.66■■□□□ 1.22
SHKBP1-221ENST00000599833 ZBTB43O43298 467 aa22.65■■□□□ 1.22
SHKBP1-221ENST00000599833 BAATQ14032 418 aaPredicted RBP22.65■■□□□ 1.22
SHKBP1-221ENST00000599833 PRAMEF19Q5SWL8 479 aa22.65■■□□□ 1.22
SHKBP1-221ENST00000599833 MFSD14CQ5VZR4 134 aa22.65■■□□□ 1.22
SHKBP1-221ENST00000599833 LHX8Q68G74 356 aa22.65■■□□□ 1.22
SHKBP1-221ENST00000599833 MSL3Q8N5Y2 521 aaKnown RBP22.65■■□□□ 1.22
SHKBP1-221ENST00000599833 KIF2CQ99661 725 aa22.65■■□□□ 1.22
SHKBP1-221ENST00000599833 SLC5A4Q9NY91 659 aa22.65■■□□□ 1.22
SHKBP1-221ENST00000599833 DDX49Q9Y6V7 483 aaKnown RBP22.65■■□□□ 1.22
SHKBP1-221ENST00000599833 SYNGAP1Q96PV0 1343 aa22.64■■□□□ 1.22
SHKBP1-221ENST00000599833 PNMA6FA0A0J9YX94 578 aa22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 DHX16O60231 1041 aaKnown RBP22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 GNAQP50148 359 aa22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 MNX1P50219 401 aaPredicted RBP22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 RPS6P62753 249 aaKnown RBP22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 NSMFQ6X4W1 530 aa22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 UBE2Q1Q7Z7E8 422 aa22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 HOMER1Q86YM7 354 aa22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 MORC4Q8TE76 937 aa22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 LZTS2Q9BRK4 669 aa22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 AMNQ9BXJ7 453 aa22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 HMX1Q9NP08 348 aaPredicted RBP22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 COL20A1Q9P218 1284 aa22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 CYP46A1Q9Y6A2 500 aa22.64■■□□□ 1.21
SHKBP1-221ENST00000599833 POTEB2H3BUK9 544 aa22.63■■□□□ 1.21
SHKBP1-221ENST00000599833 SGPL1O95470 568 aa22.63■■□□□ 1.21
SHKBP1-221ENST00000599833 ZNF865P0CJ78 1059 aaPredicted RBP22.63■■□□□ 1.21
SHKBP1-221ENST00000599833 U2AF1L4Q8WU68 220 aaKnown RBP22.63■■□□□ 1.21
SHKBP1-221ENST00000599833 MAF1Q9H063 256 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms