RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 SEC63Q9UGP8 760 aaKnown RBP12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 PCDHA1Q9Y5I3 950 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 PTPDC1A2A3K4 754 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 K7ELQ4 463 aaPredicted RBP12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 NFIBO00712 420 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 OPLAHO14841 1288 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 SCG2P13521 617 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 MAPK4P31152 587 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 FCGRTP55899 365 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 AKAP17AQ02040 695 aaKnown RBP12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 PFKFB3Q16875 520 aaPredicted RBP12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 TKFCQ3LXA3 575 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 TYW1BQ6NUM6 668 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 CPLX2Q6PUV4 134 aaKnown RBP12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 HEATR3Q7Z4Q2 680 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 PLEKHH3Q7Z736 793 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 CCAR1Q8IX12 1150 aaKnown RBP12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 CHST13Q8NET6 341 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 TBC1D5Q92609 795 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 SHISA4Q96DD7 197 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 DDX11Q96FC9 970 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 MROH8Q9H579 483 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 ZNFX1Q9P2E3 1918 aaKnown RBP12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 PLXNB2O15031 1838 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 ABCB11O95342 1321 aa12.37□□□□□ -0.43
SMARCA4-213ENST00000587988 TNPO2O14787 897 aaKnown RBP12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 CDKL5O76039 1030 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 DEXIO95424 95 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 PTPREP23469 700 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 COPB2P35606 906 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 CUL4AQ13619 759 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 KIF22Q14807 665 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 TRIM22Q8IYM9 498 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 SMARCC2Q8TAQ2 1214 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 ERO1AQ96HE7 468 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 ACAD9Q9H845 621 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 ORC3Q9UBD5 711 aaPredicted RBP12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 GJD2Q9UKL4 321 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 GABRQQ9UN88 632 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 MRPL11Q9Y3B7 192 aaKnown RBP12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 STK36Q9NRP7 1315 aa12.36□□□□□ -0.43
SMARCA4-213ENST00000587988 STXBP3O00186 592 aa12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 MORN1Q5T089 497 aa12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 NSMFQ6X4W1 530 aa12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 HSCBQ8IWL3 235 aa12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 MMP19Q99542 508 aa12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 LLPHQ9BRT6 129 aaKnown RBP12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 CWC22Q9HCG8 908 aaKnown RBP12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 A1CFQ9NQ94 594 aaKnown RBP12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 GJB4Q9NTQ9 266 aa12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 BARHL2Q9NY43 387 aa12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 VPS54Q9P1Q0 977 aa12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 RBM27Q9P2N5 1060 aaKnown RBP12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 FBXO40Q9UH90 709 aa12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 PNMA2Q9UL42 364 aa12.35□□□□□ -0.43
SMARCA4-213ENST00000587988 SLC15A5A6NIM6 579 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 ADAMTS3O15072 1205 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 STRNO43815 780 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 COBLO75128 1261 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 PGK2P07205 417 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 FCER1AP12319 257 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 ADORA2AP29274 412 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 NAPAP54920 295 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 PRKCZQ05513 592 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 BAATQ14032 418 aaPredicted RBP12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 GRB14Q14449 540 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 ANKRD35Q8N283 1001 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 USP6NLQ92738 828 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 PURBQ96QR8 312 aaKnown RBP12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 FOXD4L1Q9NU39 408 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 TRIM17Q9Y577 477 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 IVNS1ABPQ9Y6Y0 642 aa12.34□□□□□ -0.43
SMARCA4-213ENST00000587988 LCTP09848 1927 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 DNAJC25-GNG10A0A024R161 153 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 hCG_1984214I3L0E3 225 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 CFBP00751 764 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 FLT3LGP49771 235 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 FOSBP53539 338 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 RPS6P62753 249 aaKnown RBP12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 TRAF1Q13077 416 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 KCTD2Q14681 263 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 SLC30A10Q6XR72 485 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 RNF207Q6ZRF8 634 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 OTOP1Q7RTM1 612 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 ABRAQ8N0Z2 381 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 ZNF713Q8N859 430 aaPredicted RBP12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 RGS22Q8NE09 1264 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 NPLOC4Q8TAT6 608 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 NUDT12Q9BQG2 462 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 ALG1Q9BT22 464 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 TSHZ2Q9NRE2 1034 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 CYP39A1Q9NYL5 469 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 COL20A1Q9P218 1284 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 SRRDQ9UH36 339 aa12.33□□□□□ -0.44
SMARCA4-213ENST00000587988 SMCO2A6NFE2 343 aa12.32□□□□□ -0.44
SMARCA4-213ENST00000587988 MEIS2O14770 477 aa12.32□□□□□ -0.44
SMARCA4-213ENST00000587988 CYP2B6P20813 491 aa12.32□□□□□ -0.44
SMARCA4-213ENST00000587988 CALML3P27482 149 aa12.32□□□□□ -0.44
SMARCA4-213ENST00000587988 HOXD10P28358 340 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms