RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 CALM1P0DP23 149 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 CALM2P0DP24 149 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 CALM3P0DP25 149 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 CNTN2Q02246 1040 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 ACVR2BQ13705 512 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 BAATQ14032 418 aaPredicted RBP12.66□□□□□ -0.38
CLIP3-203ENST00000586457 NECTIN1Q15223 517 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 SEC23AQ15436 765 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 MUM1L1Q5H9M0 696 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 MAMDC4Q6UXC1 1216 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLIP3-203ENST00000586457 CCDC144CPQ8IYA2 1237 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 TRPV1Q8NER1 839 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 NEK1Q96PY6 1258 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 MTA3Q9BTC8 594 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 AMNQ9BXJ7 453 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 CPVLQ9H3G5 476 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 XPNPEP3Q9NQH7 507 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.66□□□□□ -0.38
CLIP3-203ENST00000586457 CYP39A1Q9NYL5 469 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 SLC12A7Q9Y666 1083 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 ZNF236Q9UL36 1845 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 ZNFX1Q9P2E3 1918 aaKnown RBP12.66□□□□□ -0.38
CLIP3-203ENST00000586457 ABCB11O95342 1321 aa12.65□□□□□ -0.38
CLIP3-203ENST00000586457 WDR19Q8NEZ3 1342 aa12.65□□□□□ -0.38
CLIP3-203ENST00000586457 DNM1LO00429 736 aa12.65□□□□□ -0.38
CLIP3-203ENST00000586457 GNAQP50148 359 aa12.65□□□□□ -0.38
CLIP3-203ENST00000586457 GJC2Q5T442 439 aaPredicted RBP12.65□□□□□ -0.38
CLIP3-203ENST00000586457 STOX1Q6ZVD7 989 aa12.65□□□□□ -0.38
CLIP3-203ENST00000586457 ARMCX2Q7L311 632 aa12.65□□□□□ -0.38
CLIP3-203ENST00000586457 HOMER1Q86YM7 354 aa12.65□□□□□ -0.38
CLIP3-203ENST00000586457 DIS3LQ8TF46 1054 aaKnown RBP12.65□□□□□ -0.38
CLIP3-203ENST00000586457 VTI1AQ96AJ9 217 aa12.65□□□□□ -0.38
CLIP3-203ENST00000586457 NAP1L2Q9ULW6 460 aaPredicted RBP12.65□□□□□ -0.38
CLIP3-203ENST00000586457 EIF5BO60841 1220 aaKnown RBP12.64□□□□□ -0.39
CLIP3-203ENST00000586457 PDE4DQ08499 809 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 GRM4Q14833 912 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 QRICH1Q2TAL8 776 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 MB21D2Q8IYB1 491 aaPredicted RBP12.64□□□□□ -0.39
CLIP3-203ENST00000586457 STAG2Q8N3U4 1231 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 FAM133AQ8N9E0 248 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 IGDCC4Q8TDY8 1250 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 LZTS2Q9BRK4 669 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 AP5M1Q9H0R1 490 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 JMJD4Q9H9V9 463 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 PRKAG2Q9UGJ0 569 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 SEC63Q9UGP8 760 aaKnown RBP12.64□□□□□ -0.39
CLIP3-203ENST00000586457 MAD2L2Q9UI95 211 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 PCDHA1Q9Y5I3 950 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 TAF6LQ9Y6J9 622 aa12.64□□□□□ -0.39
CLIP3-203ENST00000586457 PALM3A6NDB9 673 aaPredicted RBP12.63□□□□□ -0.39
CLIP3-203ENST00000586457 H0YGN5 161 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 NFIBO00712 420 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 ZBTB5O15062 677 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 DDAH1O94760 285 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 SNAI1O95863 264 aaPredicted RBP12.63□□□□□ -0.39
CLIP3-203ENST00000586457 ZNF865P0CJ78 1059 aaPredicted RBP12.63□□□□□ -0.39
CLIP3-203ENST00000586457 TAL1P17542 331 aaPredicted RBP12.63□□□□□ -0.39
CLIP3-203ENST00000586457 TNFAIP2Q03169 654 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 CCDC144BQ3MJ40 725 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 DHX32Q7L7V1 743 aaKnown RBP12.63□□□□□ -0.39
CLIP3-203ENST00000586457 EEPD1Q7L9B9 569 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 UBE2Q1Q7Z7E8 422 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 C7orf61Q8IZ16 206 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 ZNF654Q8IZM8 581 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 RGS22Q8NE09 1264 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 PIBF1Q8WXW3 757 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 RRP36Q96EU6 259 aaKnown RBP12.63□□□□□ -0.39
CLIP3-203ENST00000586457 MAP3K14Q99558 947 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 MAF1Q9H063 256 aa12.63□□□□□ -0.39
CLIP3-203ENST00000586457 TNRC18O15417 2968 aaPredicted RBP12.63□□□□□ -0.39
CLIP3-203ENST00000586457 PLXNA1Q9UIW2 1896 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 LOC102724159A0A0B4J2E5 919 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 SOWAHBA6NEL2 793 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 DUSP11O75319 330 aaKnown RBP12.62□□□□□ -0.39
CLIP3-203ENST00000586457 PGK1P00558 417 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 CFBP00751 764 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 C6orf222P0C671 652 aaPredicted RBP12.62□□□□□ -0.39
CLIP3-203ENST00000586457 PSMA5P28066 241 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 ADCYAP1R1P41586 468 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 LIFRP42702 1097 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 ATN1P54259 1190 aaPredicted RBP12.62□□□□□ -0.39
CLIP3-203ENST00000586457 ANTXR2P58335 489 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 RPS6P62753 249 aaKnown RBP12.62□□□□□ -0.39
CLIP3-203ENST00000586457 PWP2Q15269 919 aaKnown RBP12.62□□□□□ -0.39
CLIP3-203ENST00000586457 IQSEC1Q6DN90 963 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 PCSK9Q8NBP7 692 aaKnown RBP12.62□□□□□ -0.39
CLIP3-203ENST00000586457 DNERQ8NFT8 737 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 FERMT2Q96AC1 680 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 LY9Q9HBG7 655 aa12.62□□□□□ -0.39
CLIP3-203ENST00000586457 PNMA6FA0A0J9YX94 578 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 SH2B2O14492 632 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-203ENST00000586457 ZEB2O60315 1214 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 IGHA2P01877 340 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 ALDH5A1P51649 535 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-203ENST00000586457 TROAPQ12815 778 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 LRRC41Q15345 812 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 BRDTQ58F21 947 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-203ENST00000586457 GNASQ5JWF2 1037 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 ARHGEF16Q5VV41 709 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms