RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 MKL1Q969V6 931 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 DUSP9Q99956 384 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 CRTAC1Q9NQ79 661 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 SLAMF8Q9P0V8 285 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 DUSP13Q9UII6 198 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 PPP1R9AQ9ULJ8 1098 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 CEP131Q9UPN4 1083 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 SPAG9O60271 1321 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 RPGRIP1LQ68CZ1 1315 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 TMEM2Q9UHN6 1383 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 COL14A1Q05707 1796 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 SBF2Q86WG5 1849 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 PARP4Q9UKK3 1724 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 DAPK1P53355 1430 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 KCNQ2O43526 872 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 ZNF165P49910 485 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 PEAR1Q5VY43 1037 aaPredicted RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 ABCF1Q8NE71 845 aaKnown RBP eCLIP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 CPLX3Q8WVH0 158 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 NSUN3Q9H649 340 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 ZSWIM5Q9P217 1185 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 VIRMAQ69YN4 1812 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 WNK3Q9BYP7 1800 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 QRICH2Q9H0J4 1663 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 TNRC6CQ9HCJ0 1690 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 ZFYVE9O95405 1425 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 EIF3AQ14152 1382 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 PLEKHG1Q9ULL1 1385 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 SSBP05455 408 aaKnown RBP eCLIP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 NT5DC4Q86YG4 428 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 LRRC59Q96AG4 307 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 ZNF669Q96BR6 464 aaPredicted RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 CRBNQ96SW2 442 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 TRIM56Q9BRZ2 755 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 SLKQ9H2G2 1235 aaPredicted RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 LGR6Q9HBX8 967 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 C1GALT1Q9NS00 363 aa2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 CNOT6Q9ULM6 557 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-211ENST00000584897 PXDNLA1KZ92 1463 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 MBD5Q9P267 1494 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 PRAMEF27A3QJZ7 478 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 TRPA1O75762 1119 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 ZNF865P0CJ78 1059 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 KIR2DL1P43626 348 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 KIR2DL2P43627 348 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 ARID5AQ03989 594 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 CDK5R2Q13319 367 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 ORC1Q13415 861 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 WIPI1Q5MNZ9 446 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 NXPE4Q6UWF7 544 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 SEZ6L2Q6UXD5 910 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 LRP10Q7Z4F1 713 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 MRPL41Q8IXM3 137 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 LRRN4CLQ8ND94 238 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 RSRP1Q9BUV0 290 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 ZSWIM4Q9H7M6 989 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 LATS2Q9NRM7 1088 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 TNFRSF10DQ9UBN6 386 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 CNOT11Q9UKZ1 510 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 CTNND2Q9UQB3 1225 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 PXDNQ92626 1479 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 FAM83GA6ND36 823 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 H3BS24 57 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 ACPPP15309 386 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 ZNF157P51786 506 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 CDKAL1Q5VV42 579 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 PHACTR4Q8IZ21 702 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 NAT16Q8N8M0 369 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 CYB5D2Q8WUJ1 264 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 MRFAP1L1Q96HT8 127 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 BACH2Q9BYV9 841 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 ZCCHC4Q9H5U6 513 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 SLC52A1Q9NWF4 448 aa2.59□□□□□ -1.99
SMCHD1-211ENST00000584897 BRD4O60885 1362 aaPredicted RBP2.59□□□□□ -2
SMCHD1-211ENST00000584897 PPP1R12AO14974 1030 aaPredicted RBP2.59□□□□□ -2
SMCHD1-211ENST00000584897 RAG1P15918 1043 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 HOXA10P31260 410 aaPredicted RBP2.59□□□□□ -2
SMCHD1-211ENST00000584897 ADMP35318 185 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 LMNB2Q03252 620 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 RBL2Q08999 1139 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 BNIP3Q12983 259 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 TCEAL1Q15170 157 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 HLA-DQA1Q5Y7H0 255 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 NOL8Q76FK4 1167 aaKnown RBP2.59□□□□□ -2
SMCHD1-211ENST00000584897 TMEM87BQ96K49 555 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 CAMKK2Q96RR4 588 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 HIRIP3Q9BW71 556 aaPredicted RBP2.59□□□□□ -2
SMCHD1-211ENST00000584897 SPON1Q9HCB6 807 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 MBNL3Q9NUK0 354 aaKnown RBP2.59□□□□□ -2
SMCHD1-211ENST00000584897 PARP2Q9UGN5 583 aa2.59□□□□□ -2
SMCHD1-211ENST00000584897 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP2.59□□□□□ -2
SMCHD1-211ENST00000584897 DCDC2CA8MYV0 355 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 NUAK1O60285 661 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 ZNF862O60290 1169 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 ITGB7P26010 798 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 PPM1JQ5JR12 505 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 TMC4Q7Z404 712 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 USP48Q86UV5 1035 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 CKAP2LQ8IYA6 745 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 PLD6Q8N2A8 252 aaKnown RBP2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms