RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 IFIT1BQ5T764 474 aaKnown RBP21.52■■□□□ 1.04
CLN3-221ENST00000566057 NSMFQ6X4W1 530 aa21.52■■□□□ 1.04
CLN3-221ENST00000566057 CLEC4DQ8WXI8 215 aa21.52■■□□□ 1.04
CLN3-221ENST00000566057 ESYT1Q9BSJ8 1104 aa21.52■■□□□ 1.04
CLN3-221ENST00000566057 ABHD16BQ9H3Z7 469 aa21.52■■□□□ 1.04
CLN3-221ENST00000566057 FAM184BQ9ULE4 1060 aa21.52■■□□□ 1.04
CLN3-221ENST00000566057 RBM8AQ9Y5S9 174 aaKnown RBP21.52■■□□□ 1.04
CLN3-221ENST00000566057 LRRC37A2A6NM11 1700 aa21.52■■□□□ 1.03
CLN3-221ENST00000566057 ADCYAP1R1P41586 468 aa21.51■■□□□ 1.03
CLN3-221ENST00000566057 BAATQ14032 418 aaPredicted RBP21.51■■□□□ 1.03
CLN3-221ENST00000566057 CCDC144BQ3MJ40 725 aa21.51■■□□□ 1.03
CLN3-221ENST00000566057 BMP2KLQ5H9B9 411 aa21.51■■□□□ 1.03
CLN3-221ENST00000566057 FERMT2Q96AC1 680 aa21.51■■□□□ 1.03
CLN3-221ENST00000566057 LSG1Q9H089 658 aaKnown RBP21.51■■□□□ 1.03
CLN3-221ENST00000566057 PARP1P09874 1014 aaKnown RBP21.5■■□□□ 1.03
CLN3-221ENST00000566057 ASPRV1Q53RT3 343 aa21.5■■□□□ 1.03
CLN3-221ENST00000566057 CHST3Q7LGC8 479 aa21.5■■□□□ 1.03
CLN3-221ENST00000566057 ADGRF4Q8IZF3 695 aa21.5■■□□□ 1.03
CLN3-221ENST00000566057 STAG2Q8N3U4 1231 aa21.5■■□□□ 1.03
CLN3-221ENST00000566057 SENP2Q9HC62 589 aa21.5■■□□□ 1.03
CLN3-221ENST00000566057 WDR19Q8NEZ3 1342 aa21.5■■□□□ 1.03
CLN3-221ENST00000566057 ADAMTS4O75173 837 aa21.49■■□□□ 1.03
CLN3-221ENST00000566057 SLC34A2O95436 690 aa21.49■■□□□ 1.03
CLN3-221ENST00000566057 IRX5P78411 483 aaPredicted RBP21.49■■□□□ 1.03
CLN3-221ENST00000566057 SLC39A5Q6ZMH5 540 aa21.49■■□□□ 1.03
CLN3-221ENST00000566057 KIAA1211Q6ZU35 1233 aa21.49■■□□□ 1.03
CLN3-221ENST00000566057 NCOA7Q8NI08 942 aa21.49■■□□□ 1.03
CLN3-221ENST00000566057 PHF24Q9UPV7 400 aa21.49■■□□□ 1.03
CLN3-221ENST00000566057 SYNRGQ9UMZ2 1314 aa21.49■■□□□ 1.03
CLN3-221ENST00000566057 SZT2Q5T011 3432 aa21.49■■□□□ 1.03
CLN3-221ENST00000566057 ASB14A6NK59 587 aa21.48■■□□□ 1.03
CLN3-221ENST00000566057 IFIT3O14879 490 aaKnown RBP21.48■■□□□ 1.03
CLN3-221ENST00000566057 ANTXR2P58335 489 aa21.48■■□□□ 1.03
CLN3-221ENST00000566057 USH1GQ495M9 461 aa21.48■■□□□ 1.03
CLN3-221ENST00000566057 RNF180Q86T96 592 aa21.48■■□□□ 1.03
CLN3-221ENST00000566057 CCDC136Q96JN2 1154 aa21.48■■□□□ 1.03
CLN3-221ENST00000566057 VAT1LQ9HCJ6 419 aa21.48■■□□□ 1.03
CLN3-221ENST00000566057 PTPDC1A2A3K4 754 aa21.47■■□□□ 1.03
CLN3-221ENST00000566057 DUSP11O75319 330 aaKnown RBP21.47■■□□□ 1.03
CLN3-221ENST00000566057 RTP1P59025 263 aa21.47■■□□□ 1.03
CLN3-221ENST00000566057 CDC37Q16543 378 aaPredicted RBP21.47■■□□□ 1.03
CLN3-221ENST00000566057 SLC30A10Q6XR72 485 aa21.47■■□□□ 1.03
CLN3-221ENST00000566057 RALYLQ86SE5 291 aaKnown RBP21.47■■□□□ 1.03
CLN3-221ENST00000566057 MB21D2Q8IYB1 491 aaPredicted RBP21.47■■□□□ 1.03
CLN3-221ENST00000566057 KLHDC9Q8NEP7 349 aa21.47■■□□□ 1.03
CLN3-221ENST00000566057 GDF15Q99988 308 aa21.47■■□□□ 1.03
CLN3-221ENST00000566057 JMJD4Q9H9V9 463 aa21.47■■□□□ 1.03
CLN3-221ENST00000566057 MAD2L2Q9UI95 211 aa21.47■■□□□ 1.03
CLN3-221ENST00000566057 PNMA2Q9UL42 364 aa21.47■■□□□ 1.03
CLN3-221ENST00000566057 LAMA3Q16787 3333 aa21.46■■□□□ 1.03
CLN3-221ENST00000566057 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.46■■□□□ 1.03
CLN3-221ENST00000566057 MYADML2A6NDP7 307 aa21.46■■□□□ 1.03
CLN3-221ENST00000566057 CALML3P27482 149 aa21.46■■□□□ 1.03
CLN3-221ENST00000566057 FXR1P51114 621 aaKnown RBP eCLIP21.46■■□□□ 1.03
CLN3-221ENST00000566057 COL9A3Q14050 684 aaPredicted RBP21.46■■□□□ 1.03
CLN3-221ENST00000566057 RNF207Q6ZRF8 634 aa21.46■■□□□ 1.03
CLN3-221ENST00000566057 EEPD1Q7L9B9 569 aa21.46■■□□□ 1.03
CLN3-221ENST00000566057 MORC4Q8TE76 937 aa21.46■■□□□ 1.03
CLN3-221ENST00000566057 PALM3A6NDB9 673 aaPredicted RBP21.45■■□□□ 1.02
CLN3-221ENST00000566057 KLRF2D3W0D1 207 aa21.45■■□□□ 1.02
CLN3-221ENST00000566057 ALDH5A1P51649 535 aaPredicted RBP21.45■■□□□ 1.02
CLN3-221ENST00000566057 RPS6P62753 249 aaKnown RBP21.45■■□□□ 1.02
CLN3-221ENST00000566057 SNX17Q15036 470 aa21.45■■□□□ 1.02
CLN3-221ENST00000566057 NECTIN1Q15223 517 aa21.45■■□□□ 1.02
CLN3-221ENST00000566057 KCNA10Q16322 511 aa21.45■■□□□ 1.02
CLN3-221ENST00000566057 QRICH1Q2TAL8 776 aa21.45■■□□□ 1.02
CLN3-221ENST00000566057 CCSAPQ6IQ19 270 aaPredicted RBP21.45■■□□□ 1.02
CLN3-221ENST00000566057 TAPT1Q6NXT6 567 aa21.45■■□□□ 1.02
CLN3-221ENST00000566057 IGDCC4Q8TDY8 1250 aa21.45■■□□□ 1.02
CLN3-221ENST00000566057 TBC1D5Q92609 795 aa21.45■■□□□ 1.02
CLN3-221ENST00000566057 PDGFCQ9NRA1 345 aa21.45■■□□□ 1.02
CLN3-221ENST00000566057 ATP11BQ9Y2G3 1177 aa21.45■■□□□ 1.02
CLN3-221ENST00000566057 A0A1W2PQ45 241 aaPredicted RBP21.44■■□□□ 1.02
CLN3-221ENST00000566057 A0A1W2PQY0 241 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 SLC27A2O14975 620 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 DHX16O60231 1041 aaKnown RBP21.44■■□□□ 1.02
CLN3-221ENST00000566057 PTGS1P23219 599 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 MAGEA10P43363 369 aaPredicted RBP21.44■■□□□ 1.02
CLN3-221ENST00000566057 ACLYP53396 1101 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 GJA9P57773 515 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 TNFAIP2Q03169 654 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 WTAPQ15007 396 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 SLC35G1Q2M3R5 365 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 TRIM60Q495X7 471 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 TMEM63BQ5T3F8 832 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 FBXO16Q8IX29 292 aaPredicted RBP21.44■■□□□ 1.02
CLN3-221ENST00000566057 TSEN34Q9BSV6 310 aaKnown RBP21.44■■□□□ 1.02
CLN3-221ENST00000566057 UPF3AQ9H1J1 476 aaKnown RBP21.44■■□□□ 1.02
CLN3-221ENST00000566057 ANO2Q9NQ90 1003 aa21.44■■□□□ 1.02
CLN3-221ENST00000566057 GPHNQ9NQX3 736 aaPredicted RBP21.44■■□□□ 1.02
CLN3-221ENST00000566057 ADD3Q9UEY8 706 aaKnown RBP21.44■■□□□ 1.02
CLN3-221ENST00000566057 LTBP2Q14767 1821 aa21.43■■□□□ 1.02
CLN3-221ENST00000566057 ERICH2A1L162 156 aa21.43■■□□□ 1.02
CLN3-221ENST00000566057 CTAGE5O15320 804 aa21.43■■□□□ 1.02
CLN3-221ENST00000566057 C6orf222P0C671 652 aaPredicted RBP21.43■■□□□ 1.02
CLN3-221ENST00000566057 TROAPQ12815 778 aa21.43■■□□□ 1.02
CLN3-221ENST00000566057 GRM4Q14833 912 aa21.43■■□□□ 1.02
CLN3-221ENST00000566057 TMEM67Q5HYA8 995 aa21.43■■□□□ 1.02
CLN3-221ENST00000566057 CREB3L3Q68CJ9 461 aa21.43■■□□□ 1.02
CLN3-221ENST00000566057 ABCB11O95342 1321 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms