RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SEPT9Q9UHD8 586 aaPredicted RBP10.35□□□□□ -0.75
VPS39-205ENST00000562258 FEM1BQ9UK73 627 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 ORC4O43929 436 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 CTNND1O60716 968 aaKnown RBP10.34□□□□□ -0.75
VPS39-205ENST00000562258 NFX1Q12986 1120 aaKnown RBP10.34□□□□□ -0.75
VPS39-205ENST00000562258 DCAF4Q8WV16 495 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 SH2D3AQ9BRG2 576 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 APOL6Q9BWW8 343 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 MRPL44Q9H9J2 332 aaKnown RBP10.34□□□□□ -0.75
VPS39-205ENST00000562258 FAM160A1Q05DH4 1040 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 STRN3Q13033 797 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 KLHL40Q2TBA0 621 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 PDXDC2PQ6P474 469 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 FNBP1Q96RU3 617 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 IMPG2Q9BZV3 1241 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 SERTAD1Q9UHV2 236 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 CPA4Q9UI42 421 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 PNMA2Q9UL42 364 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 PRPF3O43395 683 aaKnown RBP10.34□□□□□ -0.75
VPS39-205ENST00000562258 POLGP54098 1239 aaPredicted RBP10.34□□□□□ -0.75
VPS39-205ENST00000562258 MTERF2Q49AM1 385 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 C16orf86Q6ZW13 317 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 OTUD6AQ7L8S5 288 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 GPBP1Q86WP2 473 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 VGLL2Q8N8G2 317 aa10.34□□□□□ -0.75
VPS39-205ENST00000562258 ZNF397Q8NF99 534 aaPredicted RBP10.34□□□□□ -0.75
VPS39-205ENST00000562258 MACROD2A1Z1Q3 448 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 CUTAO60888 179 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 ERO1BQ86YB8 467 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 SCYL3Q8IZE3 742 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 SRBD1Q8N5C6 995 aaKnown RBP10.33□□□□□ -0.76
VPS39-205ENST00000562258 DEPTORQ8TB45 409 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 OXER1Q8TDS5 423 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 AGBL1Q96MI9 1066 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 MAP7D2Q96T17 732 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 TEX13BQ9BXU2 312 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 PRR12Q9ULL5 1215 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 PCDHA6Q9UN73 950 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 PCDHA8Q9Y5H6 950 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 FAM205AQ6ZU69 1335 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 INO80B-WBP1J3KQ70 363 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 GUCY1A2P33402 732 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 NWD1Q149M9 1564 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 ZSCAN23Q3MJ62 389 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 SBK1Q52WX2 424 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 ILDR2Q71H61 639 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 TMC6Q7Z403 805 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 CAGE1Q8TC20 777 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 OPTNQ96CV9 577 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 MMP19Q99542 508 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 INO80BQ9C086 356 aaPredicted RBP10.33□□□□□ -0.76
VPS39-205ENST00000562258 PCDHB6Q9Y5E3 794 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 KIAA0100Q14667 2235 aaKnown RBP10.33□□□□□ -0.76
VPS39-205ENST00000562258 ELP1O95163 1332 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 SFPQP23246 707 aaKnown RBP eCLIP10.33□□□□□ -0.76
VPS39-205ENST00000562258 KIAA1328Q86T90 577 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 ACAD9Q9H845 621 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 FBXO40Q9UH90 709 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 AKT3Q9Y243 479 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 ABCB11O95342 1321 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 VIL1P09327 827 aaKnown RBP10.33□□□□□ -0.76
VPS39-205ENST00000562258 POTEJP0CG39 1038 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 ZNF543Q08ER8 600 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 TMED8Q6PL24 325 aaPredicted RBP10.33□□□□□ -0.76
VPS39-205ENST00000562258 FERMT2Q96AC1 680 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 CDCA5Q96FF9 252 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 CEP170P1Q96L14 293 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.33□□□□□ -0.76
VPS39-205ENST00000562258 ZFYVE28Q9HCC9 887 aa10.33□□□□□ -0.76
VPS39-205ENST00000562258 BRD1O95696 1058 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 CETPP11597 493 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 PTGS1P23219 599 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 STXBP2Q15833 593 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 NSUN6Q8TEA1 469 aaKnown RBP10.32□□□□□ -0.76
VPS39-205ENST00000562258 PCDHB13Q9Y5F0 798 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 PXDNLA1KZ92 1463 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 ASTN2O75129 1339 aaPredicted RBP10.32□□□□□ -0.76
VPS39-205ENST00000562258 GLTPD2A6NH11 291 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 YDJCA8MPS7 323 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 C19orf81C9J6K1 198 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 NFKBIEO00221 500 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 MMP1P03956 469 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 KRT19P08727 400 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 UBASH3AP57075 661 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 SPDYE2Q495Y8 402 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 RASGRP2Q7LDG7 609 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 LUC7LQ9NQ29 371 aaKnown RBP10.32□□□□□ -0.76
VPS39-205ENST00000562258 ZNF541Q9H0D2 1346 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 EXOC3O60645 756 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 CCND2P30279 289 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 KIF23Q02241 960 aaPredicted RBP10.32□□□□□ -0.76
VPS39-205ENST00000562258 TYRO3Q06418 890 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 GALNT17Q6IS24 598 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 USP37Q86T82 979 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 SLC7A3Q8WY07 619 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 TMX1Q9H3N1 280 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 NRBP2Q9NSY0 501 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 PRKAG2Q9UGJ0 569 aa10.32□□□□□ -0.76
VPS39-205ENST00000562258 MYL3P08590 195 aa10.31□□□□□ -0.76
VPS39-205ENST00000562258 PDHBP11177 359 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms