RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 BAZ2BQ9UIF8 2168 aaKnown RBP18.32■□□□□ 0.52
VPS39-203ENST00000561797 PTPDC1A2A3K4 754 aa18.31■□□□□ 0.52
VPS39-203ENST00000561797 NFIBO00712 420 aa18.31■□□□□ 0.52
VPS39-203ENST00000561797 IFIT3O14879 490 aaKnown RBP18.31■□□□□ 0.52
VPS39-203ENST00000561797 DHX16O60231 1041 aaKnown RBP18.31■□□□□ 0.52
VPS39-203ENST00000561797 BAATQ14032 418 aaPredicted RBP18.31■□□□□ 0.52
VPS39-203ENST00000561797 USH1GQ495M9 461 aa18.31■□□□□ 0.52
VPS39-203ENST00000561797 ASPRV1Q53RT3 343 aa18.31■□□□□ 0.52
VPS39-203ENST00000561797 ADGRF4Q8IZF3 695 aa18.31■□□□□ 0.52
VPS39-203ENST00000561797 FERMT2Q96AC1 680 aa18.31■□□□□ 0.52
VPS39-203ENST00000561797 PURBQ96QR8 312 aaKnown RBP18.31■□□□□ 0.52
VPS39-203ENST00000561797 LSG1Q9H089 658 aaKnown RBP18.31■□□□□ 0.52
VPS39-203ENST00000561797 ABHD16BQ9H3Z7 469 aa18.31■□□□□ 0.52
VPS39-203ENST00000561797 VAT1LQ9HCJ6 419 aa18.31■□□□□ 0.52
VPS39-203ENST00000561797 DDX49Q9Y6V7 483 aaKnown RBP18.31■□□□□ 0.52
VPS39-203ENST00000561797 ERICH2A1L162 156 aa18.3■□□□□ 0.52
VPS39-203ENST00000561797 ASB14A6NK59 587 aa18.3■□□□□ 0.52
VPS39-203ENST00000561797 ADCYAP1R1P41586 468 aa18.3■□□□□ 0.52
VPS39-203ENST00000561797 CDC37Q16543 378 aaPredicted RBP18.3■□□□□ 0.52
VPS39-203ENST00000561797 CCDC144BQ3MJ40 725 aa18.3■□□□□ 0.52
VPS39-203ENST00000561797 ANO2Q9NQ90 1003 aa18.3■□□□□ 0.52
VPS39-203ENST00000561797 PNMA2Q9UL42 364 aa18.3■□□□□ 0.52
VPS39-203ENST00000561797 ASTN1O14525 1302 aa18.29■□□□□ 0.52
VPS39-203ENST00000561797 NEFLP07196 543 aa18.29■□□□□ 0.52
VPS39-203ENST00000561797 CALML3P27482 149 aa18.29■□□□□ 0.52
VPS39-203ENST00000561797 WTAPQ15007 396 aa18.29■□□□□ 0.52
VPS39-203ENST00000561797 RNF180Q86T96 592 aa18.29■□□□□ 0.52
VPS39-203ENST00000561797 STAG2Q8N3U4 1231 aa18.29■□□□□ 0.52
VPS39-203ENST00000561797 CLEC4DQ8WXI8 215 aa18.29■□□□□ 0.52
VPS39-203ENST00000561797 SENP2Q9HC62 589 aa18.29■□□□□ 0.52
VPS39-203ENST00000561797 PCDH10Q9P2E7 1040 aa18.29■□□□□ 0.52
VPS39-203ENST00000561797 RBM27Q9P2N5 1060 aaKnown RBP18.29■□□□□ 0.52
VPS39-203ENST00000561797 WDR19Q8NEZ3 1342 aa18.28■□□□□ 0.52
VPS39-203ENST00000561797 SYNRGQ9UMZ2 1314 aa18.28■□□□□ 0.52
VPS39-203ENST00000561797 ADCY6O43306 1168 aa18.28■□□□□ 0.52
VPS39-203ENST00000561797 RTP1P59025 263 aa18.28■□□□□ 0.52
VPS39-203ENST00000561797 SART3Q15020 963 aaKnown RBP18.28■□□□□ 0.52
VPS39-203ENST00000561797 SLC30A10Q6XR72 485 aa18.28■□□□□ 0.52
VPS39-203ENST00000561797 SLC39A5Q6ZMH5 540 aa18.28■□□□□ 0.52
VPS39-203ENST00000561797 RNF207Q6ZRF8 634 aa18.28■□□□□ 0.52
VPS39-203ENST00000561797 EEPD1Q7L9B9 569 aa18.28■□□□□ 0.52
VPS39-203ENST00000561797 KATNBL1Q9H079 304 aa18.28■□□□□ 0.52
VPS39-203ENST00000561797 ADAMTS4O75173 837 aa18.27■□□□□ 0.52
VPS39-203ENST00000561797 DUSP11O75319 330 aaKnown RBP18.27■□□□□ 0.52
VPS39-203ENST00000561797 ANTXR2P58335 489 aa18.27■□□□□ 0.52
VPS39-203ENST00000561797 QRICH1Q2TAL8 776 aa18.27■□□□□ 0.52
VPS39-203ENST00000561797 TMEM67Q5HYA8 995 aa18.27■□□□□ 0.52
VPS39-203ENST00000561797 NOL8Q76FK4 1167 aaKnown RBP18.27■□□□□ 0.52
VPS39-203ENST00000561797 MB21D2Q8IYB1 491 aaPredicted RBP18.27■□□□□ 0.52
VPS39-203ENST00000561797 JMJD4Q9H9V9 463 aa18.27■□□□□ 0.52
VPS39-203ENST00000561797 PHF24Q9UPV7 400 aa18.27■□□□□ 0.52
VPS39-203ENST00000561797 ATP11BQ9Y2G3 1177 aa18.27■□□□□ 0.52
VPS39-203ENST00000561797 KIAA1217Q5T5P2 1943 aa18.27■□□□□ 0.51
VPS39-203ENST00000561797 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.26■□□□□ 0.51
VPS39-203ENST00000561797 KLRF2D3W0D1 207 aa18.26■□□□□ 0.51
VPS39-203ENST00000561797 SLC27A2O14975 620 aa18.26■□□□□ 0.51
VPS39-203ENST00000561797 ALDH5A1P51649 535 aaPredicted RBP18.26■□□□□ 0.51
VPS39-203ENST00000561797 IRX5P78411 483 aaPredicted RBP18.26■□□□□ 0.51
VPS39-203ENST00000561797 ADD3Q9UEY8 706 aaKnown RBP18.26■□□□□ 0.51
VPS39-203ENST00000561797 MAD2L2Q9UI95 211 aa18.26■□□□□ 0.51
VPS39-203ENST00000561797 LTBP2Q14767 1821 aa18.26■□□□□ 0.51
VPS39-203ENST00000561797 ABCB11O95342 1321 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 PALM3A6NDB9 673 aaPredicted RBP18.25■□□□□ 0.51
VPS39-203ENST00000561797 MYADML2A6NDP7 307 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 CDC45O75419 566 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 C6orf222P0C671 652 aaPredicted RBP18.25■□□□□ 0.51
VPS39-203ENST00000561797 RPS6P62753 249 aaKnown RBP18.25■□□□□ 0.51
VPS39-203ENST00000561797 TNFAIP2Q03169 654 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 GRM4Q14833 912 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 NECTIN1Q15223 517 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 CREB3L3Q68CJ9 461 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 CASC1Q6TDU7 716 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 FBXO11Q86XK2 927 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 FBXO16Q8IX29 292 aaPredicted RBP18.25■□□□□ 0.51
VPS39-203ENST00000561797 IGDCC4Q8TDY8 1250 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 PDGFCQ9NRA1 345 aa18.25■□□□□ 0.51
VPS39-203ENST00000561797 MYH7BA7E2Y1 1941 aa18.24■□□□□ 0.51
VPS39-203ENST00000561797 A0A1W2PQ45 241 aaPredicted RBP18.24■□□□□ 0.51
VPS39-203ENST00000561797 A0A1W2PQY0 241 aa18.24■□□□□ 0.51
VPS39-203ENST00000561797 PRC1O43663 620 aa18.24■□□□□ 0.51
VPS39-203ENST00000561797 KCNA10Q16322 511 aa18.24■□□□□ 0.51
VPS39-203ENST00000561797 TRIM60Q495X7 471 aa18.24■□□□□ 0.51
VPS39-203ENST00000561797 KLHDC9Q8NEP7 349 aa18.24■□□□□ 0.51
VPS39-203ENST00000561797 TBC1D5Q92609 795 aa18.24■□□□□ 0.51
VPS39-203ENST00000561797 TSEN34Q9BSV6 310 aaKnown RBP18.24■□□□□ 0.51
VPS39-203ENST00000561797 PRO3102Q9H379 93 aa18.24■□□□□ 0.51
VPS39-203ENST00000561797 SPC25Q9HBM1 224 aa18.24■□□□□ 0.51
VPS39-203ENST00000561797 GPHNQ9NQX3 736 aaPredicted RBP18.24■□□□□ 0.51
VPS39-203ENST00000561797 MCM5P33992 734 aa18.23■□□□□ 0.51
VPS39-203ENST00000561797 MAGEA10P43363 369 aaPredicted RBP18.23■□□□□ 0.51
VPS39-203ENST00000561797 ACLYP53396 1101 aa18.23■□□□□ 0.51
VPS39-203ENST00000561797 TAPT1Q6NXT6 567 aa18.23■□□□□ 0.51
VPS39-203ENST00000561797 CATIPQ7Z7H3 387 aa18.23■□□□□ 0.51
VPS39-203ENST00000561797 MORC4Q8TE76 937 aa18.23■□□□□ 0.51
VPS39-203ENST00000561797 NUP133Q8WUM0 1156 aa18.23■□□□□ 0.51
VPS39-203ENST00000561797 GDF15Q99988 308 aa18.23■□□□□ 0.51
VPS39-203ENST00000561797 UPF3AQ9H1J1 476 aaKnown RBP18.23■□□□□ 0.51
VPS39-203ENST00000561797 TRIOBPQ9H2D6 2365 aa18.23■□□□□ 0.51
VPS39-203ENST00000561797 SMPD1P17405 629 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 PTGS1P23219 599 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms