RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 FAM184BQ9ULE4 1060 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 BRCA2P51587 3418 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 EVI5O60447 810 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 DDAH1O94760 285 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 CALM1P0DP23 149 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 CALM2P0DP24 149 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 CALM3P0DP25 149 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 GNAQP50148 359 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 FGD1P98174 961 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 USH1GQ495M9 461 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 PRAMEF19Q5SWL8 479 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 LHX8Q68G74 356 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 RNF207Q6ZRF8 634 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 STOX1Q6ZVD7 989 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 FBXO11Q86XK2 927 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 NUP133Q8WUM0 1156 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 NEK1Q96PY6 1258 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.07■□□□□ 0.16
VPS33B-206ENST00000557358 CYP39A1Q9NYL5 469 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 MRPL11Q9Y3B7 192 aaKnown RBP16.07■□□□□ 0.16
VPS33B-206ENST00000557358 ABCB11O95342 1321 aa16.07■□□□□ 0.16
VPS33B-206ENST00000557358 LOC102724159A0A0B4J2E5 919 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 DNM1LO00429 736 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 IGHA2P01877 340 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 GRM4Q14833 912 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 PWP2Q15269 919 aaKnown RBP16.06■□□□□ 0.16
VPS33B-206ENST00000557358 MUM1L1Q5H9M0 696 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 ARMCX2Q7L311 632 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 UBE2Q1Q7Z7E8 422 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 RNF180Q86T96 592 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 FAM133AQ8N9E0 248 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 TRPV1Q8NER1 839 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 AMNQ9BXJ7 453 aa16.06■□□□□ 0.16
VPS33B-206ENST00000557358 CALML3P27482 149 aa16.05■□□□□ 0.16
VPS33B-206ENST00000557358 ACVR2BQ13705 512 aa16.05■□□□□ 0.16
VPS33B-206ENST00000557358 BAATQ14032 418 aaPredicted RBP16.05■□□□□ 0.16
VPS33B-206ENST00000557358 NOL8Q76FK4 1167 aaKnown RBP16.05■□□□□ 0.16
VPS33B-206ENST00000557358 IGDCC4Q8TDY8 1250 aa16.05■□□□□ 0.16
VPS33B-206ENST00000557358 MAP3K14Q99558 947 aa16.05■□□□□ 0.16
VPS33B-206ENST00000557358 LZTS2Q9BRK4 669 aa16.05■□□□□ 0.16
VPS33B-206ENST00000557358 XPNPEP3Q9NQH7 507 aa16.05■□□□□ 0.16
VPS33B-206ENST00000557358 SLC12A7Q9Y666 1083 aa16.05■□□□□ 0.16
VPS33B-206ENST00000557358 SMCHD1A6NHR9 2005 aa16.05■□□□□ 0.16
VPS33B-206ENST00000557358 PALM3A6NDB9 673 aaPredicted RBP16.04■□□□□ 0.16
VPS33B-206ENST00000557358 ZBTB5O15062 677 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 LIFRP42702 1097 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 CNTN2Q02246 1040 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 QRICH1Q2TAL8 776 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 ANO1Q5XXA6 986 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 CCDC144CPQ8IYA2 1237 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 ZNF654Q8IZM8 581 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 RGS22Q8NE09 1264 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 DIS3LQ8TF46 1054 aaKnown RBP16.04■□□□□ 0.16
VPS33B-206ENST00000557358 SEC63Q9UGP8 760 aaKnown RBP16.04■□□□□ 0.16
VPS33B-206ENST00000557358 MAD2L2Q9UI95 211 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 TAF6LQ9Y6J9 622 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 MCM3APO60318 1980 aa16.04■□□□□ 0.16
VPS33B-206ENST00000557358 NFIBO00712 420 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 EPB41L2O43491 1005 aaKnown RBP16.03■□□□□ 0.16
VPS33B-206ENST00000557358 SNAI1O95863 264 aaPredicted RBP16.03■□□□□ 0.16
VPS33B-206ENST00000557358 ZNF865P0CJ78 1059 aaPredicted RBP16.03■□□□□ 0.16
VPS33B-206ENST00000557358 ANTXR2P58335 489 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 TROAPQ12815 778 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 TSGA10IPQ3SY00 556 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 DHX32Q7L7V1 743 aaKnown RBP16.03■□□□□ 0.16
VPS33B-206ENST00000557358 HOMER1Q86YM7 354 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 STAG2Q8N3U4 1231 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 DNERQ8NFT8 737 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 SENP6Q9GZR1 1112 aaPredicted RBP16.03■□□□□ 0.16
VPS33B-206ENST00000557358 CPVLQ9H3G5 476 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 JMJD4Q9H9V9 463 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 LY9Q9HBG7 655 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 FRMPD3Q5JV73 1810 aa16.03■□□□□ 0.16
VPS33B-206ENST00000557358 MKI67P46013 3256 aaKnown RBP16.02■□□□□ 0.16
VPS33B-206ENST00000557358 SH2B2O14492 632 aaPredicted RBP16.02■□□□□ 0.16
VPS33B-206ENST00000557358 TNRC18O15417 2968 aaPredicted RBP16.02■□□□□ 0.16
VPS33B-206ENST00000557358 DUSP11O75319 330 aaKnown RBP16.02■□□□□ 0.16
VPS33B-206ENST00000557358 PSMA5P28066 241 aa16.02■□□□□ 0.16
VPS33B-206ENST00000557358 RPS6P62753 249 aaKnown RBP16.02■□□□□ 0.16
VPS33B-206ENST00000557358 PDE4DQ08499 809 aa16.02■□□□□ 0.16
VPS33B-206ENST00000557358 GJC2Q5T442 439 aaPredicted RBP16.02■□□□□ 0.16
VPS33B-206ENST00000557358 SAMD3Q8N6K7 520 aa16.02■□□□□ 0.16
VPS33B-206ENST00000557358 CLEC4DQ8WXI8 215 aa16.02■□□□□ 0.16
VPS33B-206ENST00000557358 RRP36Q96EU6 259 aaKnown RBP16.02■□□□□ 0.16
VPS33B-206ENST00000557358 VTA1Q9NP79 307 aa16.02■□□□□ 0.16
VPS33B-206ENST00000557358 PCDHA1Q9Y5I3 950 aa16.02■□□□□ 0.16
VPS33B-206ENST00000557358 SOWAHBA6NEL2 793 aa16.01■□□□□ 0.15
VPS33B-206ENST00000557358 TAL1P17542 331 aaPredicted RBP16.01■□□□□ 0.15
VPS33B-206ENST00000557358 SMARCA1P28370 1054 aa16.01■□□□□ 0.15
VPS33B-206ENST00000557358 ALDH5A1P51649 535 aaPredicted RBP16.01■□□□□ 0.15
VPS33B-206ENST00000557358 LRRC41Q15345 812 aa16.01■□□□□ 0.15
VPS33B-206ENST00000557358 CCDC144BQ3MJ40 725 aa16.01■□□□□ 0.15
VPS33B-206ENST00000557358 PCSK9Q8NBP7 692 aaKnown RBP16.01■□□□□ 0.15
VPS33B-206ENST00000557358 AP5M1Q9H0R1 490 aa16.01■□□□□ 0.15
VPS33B-206ENST00000557358 MAP3K20Q9NYL2 800 aaKnown RBP16.01■□□□□ 0.15
VPS33B-206ENST00000557358 BAZ2BQ9UIF8 2168 aaKnown RBP16.01■□□□□ 0.15
VPS33B-206ENST00000557358 PNMA6FA0A0J9YX94 578 aa16■□□□□ 0.15
VPS33B-206ENST00000557358 ZEB2O60315 1214 aa16■□□□□ 0.15
VPS33B-206ENST00000557358 TNFAIP2Q03169 654 aa16■□□□□ 0.15
VPS33B-206ENST00000557358 IQSEC1Q6DN90 963 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms