RNA–Protein interactions for RNA: ENST00000553744.1

TMEM253-202, Transcript of transmembrane protein 253, humanhuman

TSL 3

Gene TMEM253, Length 195 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM253-202ENST00000553744 FBXL16Q8N461 479 aa13.81□□□□□ -0.2
TMEM253-202ENST00000553744 TM6SF1Q9BZW5 370 aa13.81□□□□□ -0.2
TMEM253-202ENST00000553744 RNF208Q9H0X6 261 aa13.81□□□□□ -0.2
TMEM253-202ENST00000553744 ZSWIM6Q9HCJ5 1215 aa13.81□□□□□ -0.2
TMEM253-202ENST00000553744 VAT1LQ9HCJ6 419 aa13.81□□□□□ -0.2
TMEM253-202ENST00000553744 PAK6Q9NQU5 681 aaPredicted RBP13.81□□□□□ -0.2
TMEM253-202ENST00000553744 GTF3C3Q9Y5Q9 886 aa13.81□□□□□ -0.2
TMEM253-202ENST00000553744 RPTORQ8N122 1335 aa13.81□□□□□ -0.2
TMEM253-202ENST00000553744 MKI67P46013 3256 aaKnown RBP13.81□□□□□ -0.2
TMEM253-202ENST00000553744 NFIBO00712 420 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 ZBTB5O15062 677 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 SEC24BO95487 1268 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 CYP2C19P33261 490 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 GNAQP50148 359 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 RCAN1P53805 252 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 ANAPC15P60006 121 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 FGD1P98174 961 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 Q6ZUG5 572 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 RUFY3Q7L099 469 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 FBXO11Q86XK2 927 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 RAB11FIP4Q86YS3 637 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 CCDC144CPQ8IYA2 1237 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 CLEC4DQ8WXI8 215 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 LZTS2Q9BRK4 669 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 SPZ1Q9BXG8 430 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 AGXT2Q9BYV1 514 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.8□□□□□ -0.2
TMEM253-202ENST00000553744 HMX1Q9NP08 348 aaPredicted RBP13.8□□□□□ -0.2
TMEM253-202ENST00000553744 CYP39A1Q9NYL5 469 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 BRPF3Q9ULD4 1205 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 ABCB11O95342 1321 aa13.8□□□□□ -0.2
TMEM253-202ENST00000553744 PLXNA1Q9UIW2 1896 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 KLF18A0A0U1RQI7 1052 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 POTEB2H3BUK9 544 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 ZBTB43O43298 467 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 PLEKHA8P1O95397 391 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 GJB1P08034 283 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 SMARCA1P28370 1054 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 NSMFQ6X4W1 530 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 ZNF467Q7Z7K2 595 aaPredicted RBP13.79□□□□□ -0.2
TMEM253-202ENST00000553744 HOMER1Q86YM7 354 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 MSL3Q8N5Y2 521 aaKnown RBP13.79□□□□□ -0.2
TMEM253-202ENST00000553744 FAM133AQ8N9E0 248 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 FANCBQ8NB91 859 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 BRF1Q92994 677 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 FGD4Q96M96 766 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 PIGSQ96S52 555 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 TINF2Q9BSI4 451 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 AMNQ9BXJ7 453 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 CYP46A1Q9Y6A2 500 aa13.79□□□□□ -0.2
TMEM253-202ENST00000553744 ZNFX1Q9P2E3 1918 aaKnown RBP13.79□□□□□ -0.2
TMEM253-202ENST00000553744 PPP1R11O60927 126 aaPredicted RBP13.78□□□□□ -0.2
TMEM253-202ENST00000553744 CYBAP13498 195 aa13.78□□□□□ -0.2
TMEM253-202ENST00000553744 CCND3P30281 292 aaPredicted RBP13.78□□□□□ -0.2
TMEM253-202ENST00000553744 GJA8P48165 433 aa13.78□□□□□ -0.2
TMEM253-202ENST00000553744 CNTN2Q02246 1040 aa13.78□□□□□ -0.2
TMEM253-202ENST00000553744 APOBRQ0VD83 1088 aa13.78□□□□□ -0.2
TMEM253-202ENST00000553744 MAMDC4Q6UXC1 1216 aa13.78□□□□□ -0.2
TMEM253-202ENST00000553744 TMTC3Q6ZXV5 915 aa13.78□□□□□ -0.2
TMEM253-202ENST00000553744 SRBD1Q8N5C6 995 aaKnown RBP13.78□□□□□ -0.2
TMEM253-202ENST00000553744 U2AF1L4Q8WU68 220 aaKnown RBP13.78□□□□□ -0.2
TMEM253-202ENST00000553744 IL17RAQ96F46 866 aa13.78□□□□□ -0.2
TMEM253-202ENST00000553744 UPF3BQ9BZI7 483 aaKnown RBP13.78□□□□□ -0.2
TMEM253-202ENST00000553744 RBM28Q9NW13 759 aaKnown RBP13.78□□□□□ -0.2
TMEM253-202ENST00000553744 MRPL11Q9Y3B7 192 aaKnown RBP13.78□□□□□ -0.2
TMEM253-202ENST00000553744 SYNGAP1Q96PV0 1343 aa13.78□□□□□ -0.2
TMEM253-202ENST00000553744 NID2Q14112 1375 aa13.78□□□□□ -0.2
TMEM253-202ENST00000553744 PNMA6FA0A0J9YX94 578 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 PTPDC1A2A3K4 754 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 SOWAHBA6NEL2 793 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 GOLGA8AA7E2F4 631 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 GOLGA8BA8MQT2 603 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 EN2P19622 333 aaPredicted RBP13.77□□□□□ -0.21
TMEM253-202ENST00000553744 TRAF1Q13077 416 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 BAATQ14032 418 aaPredicted RBP13.77□□□□□ -0.21
TMEM253-202ENST00000553744 RTN1Q16799 776 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 HABP4Q5JVS0 413 aaKnown RBP13.77□□□□□ -0.21
TMEM253-202ENST00000553744 SLC30A10Q6XR72 485 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 RNF207Q6ZRF8 634 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 CMTR1Q8N1G2 835 aaKnown RBP13.77□□□□□ -0.21
TMEM253-202ENST00000553744 RGS22Q8NE09 1264 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 TRPV1Q8NER1 839 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 SHISA4Q96DD7 197 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 RRP36Q96EU6 259 aaKnown RBP13.77□□□□□ -0.21
TMEM253-202ENST00000553744 DEFB118Q96PH6 123 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 MAF1Q9H063 256 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 NRBP1Q9UHY1 535 aa13.77□□□□□ -0.21
TMEM253-202ENST00000553744 NAP1L2Q9ULW6 460 aaPredicted RBP13.77□□□□□ -0.21
TMEM253-202ENST00000553744 SMCHD1A6NHR9 2005 aa13.76□□□□□ -0.21
TMEM253-202ENST00000553744 LCTP09848 1927 aa13.76□□□□□ -0.21
TMEM253-202ENST00000553744 ASTN1O14525 1302 aa13.76□□□□□ -0.21
TMEM253-202ENST00000553744 CNTNAP5Q8WYK1 1306 aa13.76□□□□□ -0.21
TMEM253-202ENST00000553744 SGPL1O95470 568 aa13.76□□□□□ -0.21
TMEM253-202ENST00000553744 METAP2P50579 478 aaKnown RBP eCLIP13.76□□□□□ -0.21
TMEM253-202ENST00000553744 RPS6P62753 249 aaKnown RBP13.76□□□□□ -0.21
TMEM253-202ENST00000553744 TOB2Q14106 344 aaPredicted RBP13.76□□□□□ -0.21
TMEM253-202ENST00000553744 PIBF1Q8WXW3 757 aa13.76□□□□□ -0.21
TMEM253-202ENST00000553744 CRISPLD2Q9H0B8 497 aa13.76□□□□□ -0.21
TMEM253-202ENST00000553744 SEC63Q9UGP8 760 aaKnown RBP13.76□□□□□ -0.21
TMEM253-202ENST00000553744 PCDHA1Q9Y5I3 950 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms