RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ASPRV1Q53RT3 343 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 GJC2Q5T442 439 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 ARMCX2Q7L311 632 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 CCDC144CPQ8IYA2 1237 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 STAG2Q8N3U4 1231 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 IGDCC4Q8TDY8 1250 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 PURBQ96QR8 312 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 PNMA2Q9UL42 364 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 CNPY2Q9Y2B0 182 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 NR2E3Q9Y5X4 410 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 WDR19Q8NEZ3 1342 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 IFIT3O14879 490 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 PARP1P09874 1014 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 AKR1A1P14550 325 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 ACVR2BQ13705 512 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 BAATQ14032 418 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 LRRC41Q15345 812 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 LRRC26Q2I0M4 334 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 SLC35G1Q2M3R5 365 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 CREB3L3Q68CJ9 461 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 NSMFQ6X4W1 530 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 CHST3Q7LGC8 479 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 RALYLQ86SE5 291 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 ADGRF4Q8IZF3 695 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 ARRDC4Q8NCT1 418 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 LENG1Q96BZ8 264 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 ABHD16BQ9H3Z7 469 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 JMJD4Q9H9V9 463 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 MAD2L2Q9UI95 211 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 ZHX1Q9UKY1 873 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 DDX49Q9Y6V7 483 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 LAMA4Q16363 1823 aa12.01□□□□□ -0.49
CCDC88C-206ENST00000553437 PALM3A6NDB9 673 aaPredicted RBP12□□□□□ -0.49
CCDC88C-206ENST00000553437 ADCY6O43306 1168 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 ADAMTS4O75173 837 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 CDC45O75419 566 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 PGK1P00558 417 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 RARBP10826 455 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 TROAPQ12815 778 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 CDC37Q16543 378 aaPredicted RBP12□□□□□ -0.49
CCDC88C-206ENST00000553437 MORC4Q8TE76 937 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 MTMR8Q96EF0 704 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 SENP6Q9GZR1 1112 aaPredicted RBP12□□□□□ -0.49
CCDC88C-206ENST00000553437 PRO3102Q9H379 93 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 ANO2Q9NQ90 1003 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 XPNPEP3Q9NQH7 507 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 GPHNQ9NQX3 736 aaPredicted RBP12□□□□□ -0.49
CCDC88C-206ENST00000553437 FAM184BQ9ULE4 1060 aa12□□□□□ -0.49
CCDC88C-206ENST00000553437 COLQQ9Y215 455 aaPredicted RBP12□□□□□ -0.49
CCDC88C-206ENST00000553437 ASB14A6NK59 587 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 KLRF2D3W0D1 207 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 DLL1O00548 723 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 DUSP11O75319 330 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 NEFLP07196 543 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 GRM4Q14833 912 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 WTAPQ15007 396 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 QRICH1Q2TAL8 776 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 CCDC144BQ3MJ40 725 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 SLC30A10Q6XR72 485 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 C7orf61Q8IZ16 206 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 RGS22Q8NE09 1264 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 KLHDC9Q8NEP7 349 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 LY9Q9HBG7 655 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 VAT1LQ9HCJ6 419 aa11.99□□□□□ -0.49
CCDC88C-206ENST00000553437 UNC80Q8N2C7 3258 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 ERICH2A1L162 156 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 PTPDC1A2A3K4 754 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 KBTBD13C9JR72 458 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 PITPNM1O00562 1244 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 PPP1R11O60927 126 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 ADCYAP1R1P41586 468 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 RPS6P62753 249 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 SART3Q15020 963 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 USH1GQ495M9 461 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 TMEM67Q5HYA8 995 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 CCSAPQ6IQ19 270 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 TAPT1Q6NXT6 567 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 RNF207Q6ZRF8 634 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 TBC1D5Q92609 795 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 MTA3Q9BTC8 594 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 RIOX1Q9H6W3 641 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 ZMYND8Q9ULU4 1186 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 PHF24Q9UPV7 400 aa11.98□□□□□ -0.49
CCDC88C-206ENST00000553437 ABCB11O95342 1321 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 SYNRGQ9UMZ2 1314 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 LOC102724159A0A0B4J2E5 919 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 MYADML2A6NDP7 307 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 SH2B2O14492 632 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 CTAGE5O15320 804 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 PRC1O43663 620 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 CYTH3O43739 400 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 MYCNP04198 464 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 EDNRBP24530 442 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 CALML3P27482 149 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 MCM5P33992 734 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 ALDH5A1P51649 535 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 ATN1P54259 1190 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 NKX3-2P78367 333 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 IRX5P78411 483 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms