RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 STAG2Q8N3U4 1231 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 ABHD16BQ9H3Z7 469 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.32■□□□□ 0.52
CCDC78-216ENST00000544996 MAD2L2Q9UI95 211 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 ZHX1Q9UKY1 873 aaPredicted RBP18.32■□□□□ 0.52
CCDC78-216ENST00000544996 NR2E3Q9Y5X4 410 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 PALM3A6NDB9 673 aaPredicted RBP18.31■□□□□ 0.52
CCDC78-216ENST00000544996 DNM1LO00429 736 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 NFIBO00712 420 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 EVI5O60447 810 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 REC8O95072 547 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 TROAPQ12815 778 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 ACVR2BQ13705 512 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 KRT32Q14532 448 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 GRM4Q14833 912 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 FGD4Q96M96 766 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 NEK1Q96PY6 1258 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 JMJD4Q9H9V9 463 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 LY9Q9HBG7 655 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 SENP2Q9HC62 589 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 ADD3Q9UEY8 706 aaKnown RBP18.31■□□□□ 0.52
CCDC78-216ENST00000544996 FAM184BQ9ULE4 1060 aa18.31■□□□□ 0.52
CCDC78-216ENST00000544996 ABCB11O95342 1321 aa18.3■□□□□ 0.52
CCDC78-216ENST00000544996 MKI67P46013 3256 aaKnown RBP18.3■□□□□ 0.52
CCDC78-216ENST00000544996 SOWAHBA6NEL2 793 aa18.3■□□□□ 0.52
CCDC78-216ENST00000544996 CCDC69A6NI79 296 aa18.3■□□□□ 0.52
CCDC78-216ENST00000544996 MYCNP04198 464 aaPredicted RBP18.3■□□□□ 0.52
CCDC78-216ENST00000544996 QRICH1Q2TAL8 776 aa18.3■□□□□ 0.52
CCDC78-216ENST00000544996 RNF207Q6ZRF8 634 aa18.3■□□□□ 0.52
CCDC78-216ENST00000544996 FBXO11Q86XK2 927 aa18.3■□□□□ 0.52
CCDC78-216ENST00000544996 NUP133Q8WUM0 1156 aa18.3■□□□□ 0.52
CCDC78-216ENST00000544996 CLEC4DQ8WXI8 215 aa18.3■□□□□ 0.52
CCDC78-216ENST00000544996 MAF1Q9H063 256 aa18.3■□□□□ 0.52
CCDC78-216ENST00000544996 XPNPEP3Q9NQH7 507 aa18.3■□□□□ 0.52
CCDC78-216ENST00000544996 KBTBD13C9JR72 458 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 DDAH1O94760 285 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 COL6A1P12109 1028 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 CALML3P27482 149 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 KIF5BP33176 963 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 LIFRP42702 1097 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 TRAF1Q13077 416 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 TSGA10IPQ3SY00 556 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 MCF2L2Q86YR7 1114 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 ZNF654Q8IZM8 581 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 RGS22Q8NE09 1264 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 CTCFLQ8NI51 663 aaPredicted RBP18.29■□□□□ 0.52
CCDC78-216ENST00000544996 MPHOSPH6Q99547 160 aaKnown RBP18.29■□□□□ 0.52
CCDC78-216ENST00000544996 MAP3K14Q99558 947 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 AMNQ9BXJ7 453 aa18.29■□□□□ 0.52
CCDC78-216ENST00000544996 MRPL11Q9Y3B7 192 aaKnown RBP18.29■□□□□ 0.52
CCDC78-216ENST00000544996 ZNFX1Q9P2E3 1918 aaKnown RBP18.29■□□□□ 0.52
CCDC78-216ENST00000544996 LOC102724159A0A0B4J2E5 919 aa18.28■□□□□ 0.52
CCDC78-216ENST00000544996 SH2B2O14492 632 aaPredicted RBP18.28■□□□□ 0.52
CCDC78-216ENST00000544996 ZBTB5O15062 677 aa18.28■□□□□ 0.52
CCDC78-216ENST00000544996 PWP2Q15269 919 aaKnown RBP18.28■□□□□ 0.52
CCDC78-216ENST00000544996 GJC2Q5T442 439 aaPredicted RBP18.28■□□□□ 0.52
CCDC78-216ENST00000544996 RNF180Q86T96 592 aa18.28■□□□□ 0.52
CCDC78-216ENST00000544996 B4DLN1 442 aa18.27■□□□□ 0.52
CCDC78-216ENST00000544996 HMGB1P09429 215 aaKnown RBP18.27■□□□□ 0.52
CCDC78-216ENST00000544996 CALM1P0DP23 149 aa18.27■□□□□ 0.52
CCDC78-216ENST00000544996 CALM2P0DP24 149 aa18.27■□□□□ 0.52
CCDC78-216ENST00000544996 CALM3P0DP25 149 aa18.27■□□□□ 0.52
CCDC78-216ENST00000544996 MRPL12P52815 198 aaKnown RBP18.27■□□□□ 0.52
CCDC78-216ENST00000544996 RPS6P62753 249 aaKnown RBP18.27■□□□□ 0.52
CCDC78-216ENST00000544996 CCDC144BQ3MJ40 725 aa18.27■□□□□ 0.52
CCDC78-216ENST00000544996 SLC30A10Q6XR72 485 aa18.27■□□□□ 0.52
CCDC78-216ENST00000544996 RASEFQ8IZ41 740 aa18.27■□□□□ 0.52
CCDC78-216ENST00000544996 SENP6Q9GZR1 1112 aaPredicted RBP18.27■□□□□ 0.52
CCDC78-216ENST00000544996 RIOX1Q9H6W3 641 aa18.27■□□□□ 0.52
CCDC78-216ENST00000544996 GPHNQ9NQX3 736 aaPredicted RBP18.27■□□□□ 0.52
CCDC78-216ENST00000544996 SLC12A7Q9Y666 1083 aa18.27■□□□□ 0.52
CCDC78-216ENST00000544996 PLXNA1Q9UIW2 1896 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 PDE4DIPQ5VU43 2346 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 H0YGN5 161 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 DUSP11O75319 330 aaKnown RBP18.26■□□□□ 0.51
CCDC78-216ENST00000544996 GNAQP50148 359 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 LRRC41Q15345 812 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 SYNE3Q6ZMZ3 975 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 DHX32Q7L7V1 743 aaKnown RBP18.26■□□□□ 0.51
CCDC78-216ENST00000544996 HOMER1Q86YM7 354 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 DNERQ8NFT8 737 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 MTMR8Q96EF0 704 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 PURBQ96QR8 312 aaKnown RBP18.26■□□□□ 0.51
CCDC78-216ENST00000544996 LZTS2Q9BRK4 669 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 MYL10Q9BUA6 226 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 SPC25Q9HBM1 224 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 PCDHA1Q9Y5I3 950 aa18.26■□□□□ 0.51
CCDC78-216ENST00000544996 ASTN1O14525 1302 aa18.25■□□□□ 0.51
CCDC78-216ENST00000544996 PGK1P00558 417 aa18.25■□□□□ 0.51
CCDC78-216ENST00000544996 HSPA4P34932 840 aa18.25■□□□□ 0.51
CCDC78-216ENST00000544996 ALDH5A1P51649 535 aaPredicted RBP18.25■□□□□ 0.51
CCDC78-216ENST00000544996 NOL8Q76FK4 1167 aaKnown RBP18.25■□□□□ 0.51
CCDC78-216ENST00000544996 PIGSQ96S52 555 aa18.25■□□□□ 0.51
CCDC78-216ENST00000544996 LRRC2Q9BYS8 371 aa18.25■□□□□ 0.51
CCDC78-216ENST00000544996 VTA1Q9NP79 307 aa18.25■□□□□ 0.51
CCDC78-216ENST00000544996 PNMA6FA0A0J9YX94 578 aa18.24■□□□□ 0.51
CCDC78-216ENST00000544996 EPB41L2O43491 1005 aaKnown RBP18.24■□□□□ 0.51
CCDC78-216ENST00000544996 SMARCA1P28370 1054 aa18.24■□□□□ 0.51
CCDC78-216ENST00000544996 FGD1P98174 961 aa18.24■□□□□ 0.51
CCDC78-216ENST00000544996 EXOSC10Q01780 885 aaKnown RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms