RNA–Protein interactions for RNA: ENST00000544610.1

CDCA3-209, Transcript of cell division cycle associated 3, humanhuman

TSL 3

Gene CDCA3, Length 624 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-209ENST00000544610 PRDM5Q9NQX1 630 aaPredicted RBP7.73□□□□□ -1.17
CDCA3-209ENST00000544610 PDLIM7Q9NR12 457 aa7.73□□□□□ -1.17
CDCA3-209ENST00000544610 ARPP21Q9UBL0 812 aaPredicted RBP7.73□□□□□ -1.17
CDCA3-209ENST00000544610 NRBP1Q9UHY1 535 aa7.73□□□□□ -1.17
CDCA3-209ENST00000544610 ADAMTS5Q9UNA0 930 aa7.73□□□□□ -1.17
CDCA3-209ENST00000544610 PARP14Q460N5 1801 aa7.73□□□□□ -1.17
CDCA3-209ENST00000544610 MUC3AQ02505 3323 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 TRIM43BA6NCK2 446 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 GSG1L2A8MUP6 293 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 M0R2C6 588 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 SLC27A2O14975 620 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 FOXP2O15409 715 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 PRKAB2O43741 272 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 MBD4O95243 580 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 SLC25A27O95847 323 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 FGRP09769 529 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 FCER1AP12319 257 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 HOXB3P14651 431 aaPredicted RBP7.72□□□□□ -1.17
CDCA3-209ENST00000544610 ADCYAP1R1P41586 468 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 SMAD3P84022 425 aaKnown RBP7.72□□□□□ -1.17
CDCA3-209ENST00000544610 PTH1RQ03431 593 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 PLS1Q14651 629 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 ANKRD1Q15327 319 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 PRAMEF19Q5SWL8 479 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 C12orf60Q5U649 245 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 VPS53Q5VIR6 699 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 C16orf86Q6ZW13 317 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 IFNL3Q8IZI9 196 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 ZNF687Q8N1G0 1237 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 BADQ92934 168 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 TRIM43Q96BQ3 446 aaPredicted RBP7.72□□□□□ -1.17
CDCA3-209ENST00000544610 CCDC17Q96LX7 622 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 ZSWIM6Q9HCJ5 1215 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 XPNPEP3Q9NQH7 507 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 PHF24Q9UPV7 400 aa7.72□□□□□ -1.17
CDCA3-209ENST00000544610 LAMA4Q16363 1823 aa7.71□□□□□ -1.17
CDCA3-209ENST00000544610 CYP2D7A0A087X1C5 515 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 SMIM22K7EJ46 135 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 VWA5AO00534 786 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 ZNF213O14771 459 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 SLC3A2P08195 630 aaKnown RBP7.71□□□□□ -1.18
CDCA3-209ENST00000544610 CYP21A2P08686 494 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 RARBP10826 455 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 CDK8P49336 464 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 SLFNL1Q499Z3 407 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 SH3RF1Q7Z6J0 888 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 RIOX2Q8IUF8 465 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 AMOTL1Q8IY63 956 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 REPS2Q8NFH8 660 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 STAG1Q8WVM7 1258 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 FERMT2Q96AC1 680 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 PCMTD1Q96MG8 357 aaPredicted RBP7.71□□□□□ -1.18
CDCA3-209ENST00000544610 SEC62Q99442 399 aaKnown RBP7.71□□□□□ -1.18
CDCA3-209ENST00000544610 MMP19Q99542 508 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 CDX2Q99626 313 aaPredicted RBP7.71□□□□□ -1.18
CDCA3-209ENST00000544610 TINF2Q9BSI4 451 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 AGXT2Q9BYV1 514 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 NAPBQ9H115 298 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 TTYH1Q9H313 450 aaPredicted RBP7.71□□□□□ -1.18
CDCA3-209ENST00000544610 SEMA6BQ9H3T3 888 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 FBXO28Q9NVF7 368 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 ZNF214Q9UL59 606 aaPredicted RBP7.71□□□□□ -1.18
CDCA3-209ENST00000544610 PPP1R9AQ9ULJ8 1098 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 DIS3Q9Y2L1 958 aaKnown RBP7.71□□□□□ -1.18
CDCA3-209ENST00000544610 SNX14Q9Y5W7 946 aa7.71□□□□□ -1.18
CDCA3-209ENST00000544610 TMEM265A0A087WTH1 108 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 A0A1W2PQ45 241 aaPredicted RBP7.7□□□□□ -1.18
CDCA3-209ENST00000544610 A0A1W2PQY0 241 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 USP17L12C9JPN9 530 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 USP17L21D6R901 530 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 KIAA0355O15063 1070 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 ORC4O43929 436 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 ADAMTS4O75173 837 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 CHGBP05060 677 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 PGK2P07205 417 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 CLTBP09497 229 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 ZNF865P0CJ78 1059 aaPredicted RBP7.7□□□□□ -1.18
CDCA3-209ENST00000544610 EEF2P13639 858 aaKnown RBP7.7□□□□□ -1.18
CDCA3-209ENST00000544610 AKR1A1P14550 325 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 ITGB8P26012 769 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 COPB2P35606 906 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 RCAN1P53805 252 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 EVCP57679 992 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 FOXK1P85037 733 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 TLE2Q04725 743 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 TRDNQ13061 729 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 KCTD2Q14681 263 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 ZNF792Q3KQV3 632 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 CCDC178Q5BJE1 867 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 PPP4R3BQ5MIZ7 849 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 RUFY3Q7L099 469 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 RNF180Q86T96 592 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 IPO9Q96P70 1041 aaKnown RBP7.7□□□□□ -1.18
CDCA3-209ENST00000544610 NEK1Q96PY6 1258 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.7□□□□□ -1.18
CDCA3-209ENST00000544610 IRX2Q9BZI1 471 aaPredicted RBP7.7□□□□□ -1.18
CDCA3-209ENST00000544610 KRT23Q9C075 422 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 KANSL2Q9H9L4 492 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 GOPCQ9HD26 462 aa7.7□□□□□ -1.18
CDCA3-209ENST00000544610 CYP46A1Q9Y6A2 500 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 1084.9 ms