RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 MAF1Q9H063 256 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 ANTXR1Q9H6X2 564 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 CXXC1Q9P0U4 656 aaPredicted RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 STAP2Q9UGK3 403 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 PCDHGB7Q9Y5F8 929 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 USP3Q9Y6I4 520 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 SCN4AP35499 1836 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 PSME4Q14997 1843 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 FIGNL2A6NMB9 653 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 CDK2AP1O14519 115 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 ARID5AQ03989 594 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 AOX1Q06278 1338 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 NBPF9Q3BBW0 867 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 GNASQ5JWF2 1037 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 ANGEL2Q5VTE6 544 aaKnown RBP6.1□□□□□ -1.43
CLIP1-217ENST00000543205 MAGEB6Q8N7X4 407 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 SMC1BQ8NDV3 1235 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 PI4K2BQ8TCG2 481 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 NSUN4Q96CB9 384 aaKnown RBP6.1□□□□□ -1.43
CLIP1-217ENST00000543205 EDC3Q96F86 508 aaKnown RBP6.1□□□□□ -1.43
CLIP1-217ENST00000543205 ZDHHC15Q96MV8 337 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 SALL3Q9BXA9 1300 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 METTL5Q9NRN9 209 aaKnown RBP6.1□□□□□ -1.43
CLIP1-217ENST00000543205 PCDHAC2Q9Y5I4 1007 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 RPS6KL1Q9Y6S9 549 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 PCNTO95613 3336 aa6.1□□□□□ -1.43
CLIP1-217ENST00000543205 PPP1R12BO60237 982 aaPredicted RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 BAG3O95817 575 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 HSPA1AP0DMV8 641 aaKnown RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 HSPA1BP0DMV9 641 aaKnown RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 SNRPBP14678 240 aaKnown RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 CYP7A1P22680 504 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 RACK1P63244 317 aaKnown RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 FOXK2Q01167 660 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 LRRFIP1Q32MZ4 808 aaKnown RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 C4orf46Q504U0 113 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 SLC9C2Q5TAH2 1124 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 MAP1SQ66K74 1059 aaPredicted RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 ZSCAN25Q6NSZ9 544 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 PRICKLE2Q7Z3G6 844 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 C11orf96Q7Z7L8 435 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 CNTROBQ8N137 903 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 RHBDD1Q8TEB9 315 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 ZBED3Q96IU2 234 aaPredicted RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 PRMT6Q96LA8 375 aaPredicted RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 RPS6KC1Q96S38 1066 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 MKNK1Q9BUB5 465 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 GRIP2Q9C0E4 1043 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 TDRD3Q9H7E2 651 aaKnown RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 VEZTQ9HBM0 779 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 GGA3Q9NZ52 723 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 TMOD2Q9NZR1 351 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 DAGLAQ9Y4D2 1042 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 MYH13Q9UKX3 1938 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 MROH7-TTC4A0A0A0MT08 1334 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 ASTN2O75129 1339 aaPredicted RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 CLRN2A0PK11 232 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 IGFBP4P22692 258 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 GMPRP36959 345 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 BTDP43251 543 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 GNL2Q13823 731 aaKnown RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 APOBEC3HQ6NTF7 200 aaKnown RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 CDC37L1Q7L3B6 337 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 LYSMD3Q7Z3D4 306 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 KRT26Q7Z3Y9 468 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 APOBEC3FQ8IUX4 373 aaKnown RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 CNPY4Q8N129 248 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 KBTBD3Q8NAB2 608 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 RILPL2Q969X0 211 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 FSD1Q9BTV5 496 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 USP40Q9NVE5 1235 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 ZNF70Q9UC06 446 aaPredicted RBP6.09□□□□□ -1.43
CLIP1-217ENST00000543205 PGAP2Q9UHJ9 254 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 INPP5FQ9Y2H2 1132 aa6.09□□□□□ -1.43
CLIP1-217ENST00000543205 ZNF646O15015 1829 aaPredicted RBP6.08□□□□□ -1.44
CLIP1-217ENST00000543205 GAKO14976 1311 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 PITPNM2Q9BZ72 1349 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 ZNF532Q9HCE3 1301 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 GPR75-ASB3A0A0A6YYF3 556 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 DNAJC6O75061 913 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 PDE6AP16499 860 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 WEE1P30291 646 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 PSMA6P60900 246 aaKnown RBP6.08□□□□□ -1.44
CLIP1-217ENST00000543205 FMR1Q06787 632 aaKnown RBP eCLIP6.08□□□□□ -1.44
CLIP1-217ENST00000543205 BIRC2Q13490 618 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 TNFAIP1Q13829 316 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 CDC42EP5Q6NZY7 148 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 USP48Q86UV5 1035 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 ZNF384Q8TF68 577 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 AATFQ9NY61 560 aaKnown RBP eCLIP6.08□□□□□ -1.44
CLIP1-217ENST00000543205 AKAP11Q9UKA4 1901 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 TCP10L2B9ZVM9 353 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 RNF113AO15541 343 aaKnown RBP6.08□□□□□ -1.44
CLIP1-217ENST00000543205 MAN1A2O60476 641 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 SORBS3O60504 671 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 ZFYP08048 801 aaPredicted RBP6.08□□□□□ -1.44
CLIP1-217ENST00000543205 FGRP09769 529 aa6.08□□□□□ -1.44
CLIP1-217ENST00000543205 XRCC5P13010 732 aaKnown RBP6.08□□□□□ -1.44
CLIP1-217ENST00000543205 PTMSP20962 102 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms