RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 SLC12A7Q9Y666 1083 aa14.46□□□□□ -0.09
VPS33A-207ENST00000542790 KLRF2D3W0D1 207 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 ELNP15502 786 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 KIF5BP33176 963 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 SNAP25P60880 206 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 UBXN2AP68543 259 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 FGD1P98174 961 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 SYNE3Q6ZMZ3 975 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 SGMS1Q86VZ5 419 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 ADGRF4Q8IZF3 695 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 ZNF654Q8IZM8 581 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 CTCFLQ8NI51 663 aaPredicted RBP14.45□□□□□ -0.1
VPS33A-207ENST00000542790 NUP133Q8WUM0 1156 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 ZNF333Q96JL9 665 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 LRRC2Q9BYS8 371 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 MAD2L2Q9UI95 211 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 CCPG1Q9ULG6 757 aa14.45□□□□□ -0.1
VPS33A-207ENST00000542790 DHX16O60231 1041 aaKnown RBP14.44□□□□□ -0.1
VPS33A-207ENST00000542790 HMGCRP04035 888 aa14.44□□□□□ -0.1
VPS33A-207ENST00000542790 ALAS1P13196 640 aa14.44□□□□□ -0.1
VPS33A-207ENST00000542790 ANKRD35Q8N283 1001 aa14.44□□□□□ -0.1
VPS33A-207ENST00000542790 STAG2Q8N3U4 1231 aa14.44□□□□□ -0.1
VPS33A-207ENST00000542790 DDX11Q96FC9 970 aa14.44□□□□□ -0.1
VPS33A-207ENST00000542790 TRERF1Q96PN7 1200 aa14.44□□□□□ -0.1
VPS33A-207ENST00000542790 CPVLQ9H3G5 476 aa14.44□□□□□ -0.1
VPS33A-207ENST00000542790 ACAD9Q9H845 621 aa14.44□□□□□ -0.1
VPS33A-207ENST00000542790 VAT1LQ9HCJ6 419 aa14.44□□□□□ -0.1
VPS33A-207ENST00000542790 COBLO75128 1261 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 INHAP05111 366 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 CASTP20810 708 aaKnown RBP14.43□□□□□ -0.1
VPS33A-207ENST00000542790 RPS6KB1P23443 525 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 GNAQP50148 359 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.43□□□□□ -0.1
VPS33A-207ENST00000542790 TCEANC2Q96MN5 208 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 LZTS2Q9BRK4 669 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 TM6SF1Q9BZW5 370 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 JMJD4Q9H9V9 463 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 ZSWIM6Q9HCJ5 1215 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 HOMER2Q9NSB8 354 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 RNF146Q9NTX7 359 aa14.43□□□□□ -0.1
VPS33A-207ENST00000542790 DIS3Q9Y2L1 958 aaKnown RBP14.43□□□□□ -0.1
VPS33A-207ENST00000542790 PGK2P07205 417 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 CPA1P15085 419 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 SMARCA1P28370 1054 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 ANAPC15P60006 121 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 CDC37Q16543 378 aaPredicted RBP14.42□□□□□ -0.1
VPS33A-207ENST00000542790 RUFY3Q7L099 469 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 FBXL16Q8N461 479 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 FANCBQ8NB91 859 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 NPLOC4Q8TAT6 608 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 TRIB2Q92519 343 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 MYL10Q9BUA6 226 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 CYP46A1Q9Y6A2 500 aa14.42□□□□□ -0.1
VPS33A-207ENST00000542790 A0A0G2JMZ2 1700 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 RLFQ13129 1914 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 MYCP01106 439 aaPredicted RBP14.41□□□□□ -0.1
VPS33A-207ENST00000542790 TRAF1Q13077 416 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 CCL14Q16627 93 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 QRICH1Q2TAL8 776 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 C8orf34Q49A92 452 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 MFSD14CQ5VZR4 134 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 OLFML2BQ68BL8 750 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 APOA5Q6Q788 366 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 Q6ZUG5 572 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 RIOX1Q9H6W3 641 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 MYH4Q9Y623 1939 aa14.41□□□□□ -0.1
VPS33A-207ENST00000542790 DNAJC25-GNG10A0A024R161 153 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 KLF18A0A0U1RQI7 1052 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 ZBTB5O15062 677 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 ZBTB43O43298 467 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 CCL5P13501 91 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 RCAN1P53805 252 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 MTFR1Q15390 333 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 ZNF792Q3KQV3 632 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 IFFO2Q5TF58 517 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 MICU3Q86XE3 530 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 FBXO11Q86XK2 927 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 MTMR8Q96EF0 704 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 MAML3Q96JK9 1138 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 AMNQ9BXJ7 453 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 RNF208Q9H0X6 261 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 FLRT1Q9NZU1 646 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 BRPF3Q9ULD4 1205 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 PFASO15067 1338 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 ABCB11O95342 1321 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 RPTORQ8N122 1335 aa14.4□□□□□ -0.1
VPS33A-207ENST00000542790 ZSWIM8A7E2V4 1837 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 RXRAP19793 462 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 PPP2R5BQ15173 497 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 USH1GQ495M9 461 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 MUM1L1Q5H9M0 696 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 MAP3K21Q5TCX8 1036 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 CCDC144CPQ8IYA2 1237 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 MSL3Q8N5Y2 521 aaKnown RBP14.39□□□□□ -0.11
VPS33A-207ENST00000542790 BRF1Q92994 677 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 SPZ1Q9BXG8 430 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 AGXT2Q9BYV1 514 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 MAF1Q9H063 256 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 UNC93B1Q9H1C4 597 aa14.39□□□□□ -0.11
VPS33A-207ENST00000542790 HMX1Q9NP08 348 aaPredicted RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms