RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TJP1Q07157 1748 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 TRAF5O00463 557 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 KRT86O43790 486 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 GCFC2P16383 781 aaKnown RBP12.04□□□□□ -0.48
CLIP1-213ENST00000540338 EVX2Q03828 476 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 ORC2Q13416 577 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-213ENST00000540338 KRT31Q15323 416 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 GRIK5Q16478 980 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 USH1GQ495M9 461 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 CEP112Q8N8E3 955 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 PANX2Q96RD6 677 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 ZMYND12Q9H0C1 365 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 STK17AQ9UEE5 414 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 DLGAP5Q15398 846 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 HSP90B2PQ58FF3 399 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 DAGLBQ8NCG7 672 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 LARP4BQ92615 738 aaKnown RBP12.04□□□□□ -0.48
CLIP1-213ENST00000540338 FAM163AQ96GL9 167 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-213ENST00000540338 DOT1LQ8TEK3 1739 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 POTEB2H3BUK9 544 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 CACNB3P54284 484 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 E4F1Q66K89 784 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-213ENST00000540338 IQCEQ6IPM2 695 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 UIMC1Q96RL1 719 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 SLC39A2Q9NP94 309 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 KDM3AQ9Y4C1 1321 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 PRCPP42785 496 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 SYCP1Q15431 976 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 TCP11X2Q5H9J9 407 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 CCDC181Q5TID7 509 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 FBXO11Q86XK2 927 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 GOLGA1Q92805 767 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 P2RX5Q93086 422 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 AMNQ9BXJ7 453 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 NUP98P52948 1817 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 GTF2F1P35269 517 aaKnown RBP eCLIP12.03□□□□□ -0.48
CLIP1-213ENST00000540338 SARSP49591 514 aaKnown RBP12.03□□□□□ -0.48
CLIP1-213ENST00000540338 UBE2SQ16763 222 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 HERC4Q5GLZ8 1057 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-213ENST00000540338 NT5DC1Q5TFE4 455 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 HHIPL2Q6UWX4 724 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 SLF1Q9BQI6 1058 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 GBP3Q9H0R5 595 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.03□□□□□ -0.48
CLIP1-213ENST00000540338 TMEM260Q9NX78 707 aa12.03□□□□□ -0.48
CLIP1-213ENST00000540338 POLRMTO00411 1230 aaKnown RBP12.02□□□□□ -0.48
CLIP1-213ENST00000540338 TEX33O43247 280 aa12.02□□□□□ -0.48
CLIP1-213ENST00000540338 PDHBP11177 359 aa12.02□□□□□ -0.48
CLIP1-213ENST00000540338 CCNE1P24864 410 aa12.02□□□□□ -0.48
CLIP1-213ENST00000540338 MDM2Q00987 491 aaPredicted RBP12.02□□□□□ -0.48
CLIP1-213ENST00000540338 PPP2R3AQ06190 1150 aa12.02□□□□□ -0.48
CLIP1-213ENST00000540338 CC2D2BQ6DHV5 1058 aa12.02□□□□□ -0.48
CLIP1-213ENST00000540338 NEK11Q8NG66 645 aa12.02□□□□□ -0.48
CLIP1-213ENST00000540338 TMEM60Q9H2L4 133 aa12.02□□□□□ -0.48
CLIP1-213ENST00000540338 SH2D4AQ9H788 454 aa12.02□□□□□ -0.48
CLIP1-213ENST00000540338 TOGARAM1Q9Y4F4 1720 aa12.02□□□□□ -0.48
CLIP1-213ENST00000540338 PHLPP2Q6ZVD8 1323 aa12.02□□□□□ -0.48
CLIP1-213ENST00000540338 ZBTB5O15062 677 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 DDR1Q08345 913 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 KIF5AQ12840 1032 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 SEMA3FQ13275 785 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 TCERG1LQ5VWI1 586 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 EEF2KMTQ96G04 330 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 TUBGCP2Q9BSJ2 902 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 ITGB4P16144 1822 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 FAM205AQ6ZU69 1335 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 A0A1B0GTH6 734 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 CTAGE15A4D2H0 777 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 CTAGE8P0CG41 777 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 PPP1R18Q6NYC8 613 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 CTAGE6Q86UF2 777 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 CTAGE4Q8IX94 777 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 THAP9Q9H5L6 903 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 RXRBP28702 533 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 TUBB2AQ13885 445 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 CRY2Q49AN0 593 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 CCDC122Q5T0U0 273 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 NCAPH2Q6IBW4 605 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 CDC42EP5Q6NZY7 148 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 CCDC84Q86UT8 332 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-213ENST00000540338 ADGRF4Q8IZF3 695 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 TUBB2BQ9BVA1 445 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 MXD3Q9BW11 206 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 STK24Q9Y6E0 443 aa12.02□□□□□ -0.49
CLIP1-213ENST00000540338 BAZ2BQ9UIF8 2168 aaKnown RBP12.01□□□□□ -0.49
CLIP1-213ENST00000540338 TUBB4BP68371 445 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 NR1I3Q14994 352 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 ENOX2Q16206 610 aaKnown RBP12.01□□□□□ -0.49
CLIP1-213ENST00000540338 STXBP4Q6ZWJ1 553 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 SLFN12Q8IYM2 578 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 CSRNP1Q96S65 589 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 DNM3Q9UQ16 869 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 ECE2O60344 883 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 GDF11O95390 407 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 FOSP01100 380 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-213ENST00000540338 SRGNP10124 158 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 ZNF543Q08ER8 600 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 MCM6Q14566 821 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 KCNB1Q14721 858 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 ERCC6LQ2NKX8 1250 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms