RNA–Protein interactions for RNA: ENST00000534753.5

CCDC90B-219, Transcript of coiled-coil domain containing 90B, humanhuman

TSL 5

Gene CCDC90B, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC90B-219ENST00000534753 ERCC3P19447 782 aa10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 MFAP1P55081 439 aaKnown RBP10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 LBX2Q6XYB7 198 aa10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 DPP9Q86TI2 863 aa10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 RETREG3Q86VR2 466 aa10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 NEDD1Q8NHV4 660 aa10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 U2AF1L4Q8WU68 220 aaKnown RBP10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 TRIB2Q92519 343 aa10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 KIFC2Q96AC6 838 aa10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 SPATC1LQ9H0A9 340 aa10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 MTMR4Q9NYA4 1195 aa10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 TNRC18O15417 2968 aaPredicted RBP10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 CENPFP49454 3210 aa10.57□□□□□ -0.72
CCDC90B-219ENST00000534753 SLC15A5A6NIM6 579 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 HIP1O00291 1037 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 GJB1P08034 283 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 CNGA1P29973 690 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 TMEM132BQ14DG7 1078 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 NR6A1Q15406 480 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 TTC22Q5TAA0 569 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 SLFN13Q68D06 897 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 CPXCR1Q8N123 301 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 MB21D1Q8N884 522 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 NKX2-3Q8TAU0 364 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 SHISA4Q96DD7 197 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 APBA2Q99767 749 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 SLF1Q9BQI6 1058 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 TSR3Q9UJK0 312 aaKnown RBP10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 TACC3Q9Y6A5 838 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 DOCK3Q8IZD9 2030 aa10.56□□□□□ -0.72
CCDC90B-219ENST00000534753 IGKV6D-41A0A0C4DH26 115 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 TMEM232C9JQI7 657 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 VWA5AO00534 786 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 SGPL1O95470 568 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 GSPT1P15170 499 aaKnown RBP10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 MCCP23508 829 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 GJA8P48165 433 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 ALX1Q15699 326 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 MFSD6Q6ZSS7 791 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 DPF3Q92784 378 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 CCDC97Q96F63 343 aaPredicted RBP10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 PRM3Q9NNZ6 103 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 PPP1R9AQ9ULJ8 1098 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 PCDHB3Q9Y5E6 796 aa10.55□□□□□ -0.72
CCDC90B-219ENST00000534753 PLXNB2O15031 1838 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 ZNF213O14771 459 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 ZBED4O75132 1171 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 FARP2O94887 1054 aaPredicted RBP10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 PGK2P07205 417 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 FCER1AP12319 257 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 BMP3P12645 472 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 XRCC5P13010 732 aaKnown RBP10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 ADORA2AP29274 412 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 CCND3P30281 292 aaPredicted RBP10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 STAT3P40763 770 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 SNAP25P60880 206 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 CACNB2Q08289 660 aaPredicted RBP10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 CCDC96Q2M329 555 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 MFSD14CQ5VZR4 134 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 SNRNP48Q6IEG0 339 aaKnown RBP10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 KCTD1Q719H9 257 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 TRMT44Q8IYL2 757 aaKnown RBP10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 NPLOC4Q8TAT6 608 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 USP6NLQ92738 828 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 MMP19Q99542 508 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 ZKSCAN3Q9BRR0 538 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 MROH8Q9H579 483 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 RAVER2Q9HCJ3 691 aaKnown RBP10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 IL17RBQ9NRM6 502 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 FLRT1Q9NZU1 646 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 ANAPC4Q9UJX5 808 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 MYH4Q9Y623 1939 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 RBBP6Q7Z6E9 1792 aaKnown RBP10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 RPTORQ8N122 1335 aa10.54□□□□□ -0.72
CCDC90B-219ENST00000534753 ORC4O43929 436 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 CYP2C19P33261 490 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 SLC1A4P43007 532 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 VAC14Q08AM6 782 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 GRB14Q14449 540 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 KCTD2Q14681 263 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 AKNAD1Q5T1N1 836 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 RASGRP2Q7LDG7 609 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 SKAP1Q86WV1 359 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 TICAM2Q86XR7 235 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 TBC1D10CQ8IV04 446 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 SCUBE3Q8IX30 993 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 PRPF38AQ8NAV1 312 aaKnown RBP10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 GMCL1P1Q8NEA9 526 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 SHCBP1Q8NEM2 672 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 ADAMTS19Q8TE59 1207 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 GLMNQ92990 594 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 MKL1Q969V6 931 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 PAK6Q9NQU5 681 aaPredicted RBP10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 HOMER2Q9NSB8 354 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 FEM1BQ9UK73 627 aa10.53□□□□□ -0.72
CCDC90B-219ENST00000534753 GREB1LQ9C091 1923 aaPredicted RBP10.52□□□□□ -0.72
CCDC90B-219ENST00000534753 KIAA0100Q14667 2235 aaKnown RBP10.52□□□□□ -0.73
CCDC90B-219ENST00000534753 STRNO43815 780 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms