RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 TINF2Q9BSI4 451 aa23.11■■□□□ 1.29
CPSF1-209ENST00000532725 CYP39A1Q9NYL5 469 aa23.11■■□□□ 1.29
CPSF1-209ENST00000532725 BRPF3Q9ULD4 1205 aa23.11■■□□□ 1.29
CPSF1-209ENST00000532725 NFIBO00712 420 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 SEC24BO95487 1268 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 CALM1P0DP23 149 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 CALM2P0DP24 149 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 CALM3P0DP25 149 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 SMARCA1P28370 1054 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 KIF5BP33176 963 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 CNTN2Q02246 1040 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 MAMDC4Q6UXC1 1216 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 ZNF467Q7Z7K2 595 aaPredicted RBP23.1■■□□□ 1.29
CPSF1-209ENST00000532725 MSL3Q8N5Y2 521 aaKnown RBP23.1■■□□□ 1.29
CPSF1-209ENST00000532725 FANCBQ8NB91 859 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 CTCFLQ8NI51 663 aaPredicted RBP23.1■■□□□ 1.29
CPSF1-209ENST00000532725 CRISPLD2Q9H0B8 497 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 ZSWIM6Q9HCJ5 1215 aa23.1■■□□□ 1.29
CPSF1-209ENST00000532725 PFASO15067 1338 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 POTEB2H3BUK9 544 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 ZBTB5O15062 677 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 CYBAP13498 195 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 RXRAP19793 462 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 CASTP20810 708 aaKnown RBP23.09■■□□□ 1.29
CPSF1-209ENST00000532725 RPS6KB1P23443 525 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 USH1GQ495M9 461 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 PRAMEF19Q5SWL8 479 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 NSMFQ6X4W1 530 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 Q6ZUG5 572 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 FBXO11Q86XK2 927 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 SHISA4Q96DD7 197 aa23.09■■□□□ 1.29
CPSF1-209ENST00000532725 BAZ2BQ9UIF8 2168 aaKnown RBP23.08■■□□□ 1.29
CPSF1-209ENST00000532725 SOWAHBA6NEL2 793 aa23.08■■□□□ 1.29
CPSF1-209ENST00000532725 EIF5BO60841 1220 aaKnown RBP23.08■■□□□ 1.29
CPSF1-209ENST00000532725 PPP1R11O60927 126 aaPredicted RBP23.08■■□□□ 1.29
CPSF1-209ENST00000532725 GNAQP50148 359 aa23.08■■□□□ 1.29
CPSF1-209ENST00000532725 BAATQ14032 418 aaPredicted RBP23.08■■□□□ 1.29
CPSF1-209ENST00000532725 APOA5Q6Q788 366 aa23.08■■□□□ 1.29
CPSF1-209ENST00000532725 SYNE3Q6ZMZ3 975 aa23.08■■□□□ 1.29
CPSF1-209ENST00000532725 RAB11FIP4Q86YS3 637 aa23.08■■□□□ 1.29
CPSF1-209ENST00000532725 RGS22Q8NE09 1264 aa23.08■■□□□ 1.29
CPSF1-209ENST00000532725 PIGSQ96S52 555 aa23.08■■□□□ 1.29
CPSF1-209ENST00000532725 LZTS2Q9BRK4 669 aa23.08■■□□□ 1.29
CPSF1-209ENST00000532725 AGXT2Q9BYV1 514 aa23.08■■□□□ 1.29
CPSF1-209ENST00000532725 TM6SF1Q9BZW5 370 aa23.08■■□□□ 1.29
CPSF1-209ENST00000532725 ABCB11O95342 1321 aa23.08■■□□□ 1.28
CPSF1-209ENST00000532725 SNAI1O95863 264 aaPredicted RBP23.07■■□□□ 1.28
CPSF1-209ENST00000532725 CAPN2P17655 700 aa23.07■■□□□ 1.28
CPSF1-209ENST00000532725 LHX8Q68G74 356 aa23.07■■□□□ 1.28
CPSF1-209ENST00000532725 RUFY3Q7L099 469 aa23.07■■□□□ 1.28
CPSF1-209ENST00000532725 CCDC144CPQ8IYA2 1237 aa23.07■■□□□ 1.28
CPSF1-209ENST00000532725 SRBD1Q8N5C6 995 aaKnown RBP23.07■■□□□ 1.28
CPSF1-209ENST00000532725 SPZ1Q9BXG8 430 aa23.07■■□□□ 1.28
CPSF1-209ENST00000532725 AMNQ9BXJ7 453 aa23.07■■□□□ 1.28
CPSF1-209ENST00000532725 NRBP1Q9UHY1 535 aa23.07■■□□□ 1.28
CPSF1-209ENST00000532725 RBBP6Q7Z6E9 1792 aaKnown RBP23.06■■□□□ 1.28
CPSF1-209ENST00000532725 PNMA6FA0A0J9YX94 578 aa23.06■■□□□ 1.28
CPSF1-209ENST00000532725 PLEKHA8P1O95397 391 aa23.06■■□□□ 1.28
CPSF1-209ENST00000532725 TFRCP02786 760 aaKnown RBP23.06■■□□□ 1.28
CPSF1-209ENST00000532725 TBC1D5Q92609 795 aa23.06■■□□□ 1.28
CPSF1-209ENST00000532725 PURBQ96QR8 312 aaKnown RBP23.06■■□□□ 1.28
CPSF1-209ENST00000532725 MAF1Q9H063 256 aa23.06■■□□□ 1.28
CPSF1-209ENST00000532725 SYNGAP1Q96PV0 1343 aa23.06■■□□□ 1.28
CPSF1-209ENST00000532725 RPS6P62753 249 aaKnown RBP23.05■■□□□ 1.28
CPSF1-209ENST00000532725 FGD1P98174 961 aa23.05■■□□□ 1.28
CPSF1-209ENST00000532725 C8orf34Q49A92 452 aa23.05■■□□□ 1.28
CPSF1-209ENST00000532725 RNF207Q6ZRF8 634 aa23.05■■□□□ 1.28
CPSF1-209ENST00000532725 MICU3Q86XE3 530 aa23.05■■□□□ 1.28
CPSF1-209ENST00000532725 HOMER1Q86YM7 354 aa23.05■■□□□ 1.28
CPSF1-209ENST00000532725 CMTR1Q8N1G2 835 aaKnown RBP23.05■■□□□ 1.28
CPSF1-209ENST00000532725 BRF1Q92994 677 aa23.05■■□□□ 1.28
CPSF1-209ENST00000532725 MRPL11Q9Y3B7 192 aaKnown RBP23.05■■□□□ 1.28
CPSF1-209ENST00000532725 CYP46A1Q9Y6A2 500 aa23.05■■□□□ 1.28
CPSF1-209ENST00000532725 ASTN1O14525 1302 aa23.05■■□□□ 1.28
CPSF1-209ENST00000532725 PLXNA1Q9UIW2 1896 aa23.05■■□□□ 1.28
CPSF1-209ENST00000532725 KLF18A0A0U1RQI7 1052 aa23.04■■□□□ 1.28
CPSF1-209ENST00000532725 PTPDC1A2A3K4 754 aa23.04■■□□□ 1.28
CPSF1-209ENST00000532725 ZBTB43O43298 467 aa23.04■■□□□ 1.28
CPSF1-209ENST00000532725 ZNF865P0CJ78 1059 aaPredicted RBP23.04■■□□□ 1.28
CPSF1-209ENST00000532725 CNGA1P29973 690 aa23.04■■□□□ 1.28
CPSF1-209ENST00000532725 ANAPC15P60006 121 aa23.04■■□□□ 1.28
CPSF1-209ENST00000532725 APOBRQ0VD83 1088 aa23.04■■□□□ 1.28
CPSF1-209ENST00000532725 TMTC3Q6ZXV5 915 aa23.04■■□□□ 1.28
CPSF1-209ENST00000532725 FAM217BQ9NTX9 383 aaPredicted RBP23.04■■□□□ 1.28
CPSF1-209ENST00000532725 DDX20Q9UHI6 824 aaKnown RBP23.04■■□□□ 1.28
CPSF1-209ENST00000532725 OGDHLQ9ULD0 1010 aa23.04■■□□□ 1.28
CPSF1-209ENST00000532725 PCDHA1Q9Y5I3 950 aa23.04■■□□□ 1.28
CPSF1-209ENST00000532725 SEPT4O43236 478 aa23.03■■□□□ 1.28
CPSF1-209ENST00000532725 RCAN1P53805 252 aa23.03■■□□□ 1.28
CPSF1-209ENST00000532725 EVCP57679 992 aa23.03■■□□□ 1.28
CPSF1-209ENST00000532725 MLLT1Q03111 559 aaPredicted RBP23.03■■□□□ 1.28
CPSF1-209ENST00000532725 SLC30A10Q6XR72 485 aa23.03■■□□□ 1.28
CPSF1-209ENST00000532725 ARMCX2Q7L311 632 aa23.03■■□□□ 1.28
CPSF1-209ENST00000532725 UBE2Q1Q7Z7E8 422 aa23.03■■□□□ 1.28
CPSF1-209ENST00000532725 IL17RAQ96F46 866 aa23.03■■□□□ 1.28
CPSF1-209ENST00000532725 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.03■■□□□ 1.28
CPSF1-209ENST00000532725 ASB14A6NK59 587 aa23.02■■□□□ 1.28
CPSF1-209ENST00000532725 OPLAHO14841 1288 aa23.02■■□□□ 1.28
CPSF1-209ENST00000532725 CALML3P27482 149 aa23.02■■□□□ 1.28
CPSF1-209ENST00000532725 TRAF1Q13077 416 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms