RNA–Protein interactions for RNA: ENST00000525854.5

HIF3A-209, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-209ENST00000525854 LRIT3Q3SXY7 679 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 PNMA1Q8ND90 353 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 KLHDC9Q8NEP7 349 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 ANKS1AQ92625 1134 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 ZSCAN10Q96SZ4 725 aaPredicted RBP13.64□□□□□ -0.23
HIF3A-209ENST00000525854 ZKSCAN3Q9BRR0 538 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 UBAC1Q9BSL1 405 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 KATNBL1Q9H079 304 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 KAT14Q9H8E8 782 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 PRDM5Q9NQX1 630 aaPredicted RBP13.64□□□□□ -0.23
HIF3A-209ENST00000525854 ZSWIM5Q9P217 1185 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 ADD3Q9UEY8 706 aaKnown RBP13.64□□□□□ -0.23
HIF3A-209ENST00000525854 SMCHD1A6NHR9 2005 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 WDR19Q8NEZ3 1342 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 LOC102724159A0A0B4J2E5 919 aa13.63□□□□□ -0.23
HIF3A-209ENST00000525854 SOX1O00570 391 aaPredicted RBP13.63□□□□□ -0.23
HIF3A-209ENST00000525854 GJA9P57773 515 aa13.63□□□□□ -0.23
HIF3A-209ENST00000525854 TNFAIP2Q03169 654 aa13.63□□□□□ -0.23
HIF3A-209ENST00000525854 TLE2Q04725 743 aa13.63□□□□□ -0.23
HIF3A-209ENST00000525854 PWP2Q15269 919 aaKnown RBP13.63□□□□□ -0.23
HIF3A-209ENST00000525854 KCNA10Q16322 511 aa13.63□□□□□ -0.23
HIF3A-209ENST00000525854 GPR153Q6NV75 609 aa13.63□□□□□ -0.23
HIF3A-209ENST00000525854 NOL8Q76FK4 1167 aaKnown RBP13.63□□□□□ -0.23
HIF3A-209ENST00000525854 GLT1D1Q96MS3 346 aa13.63□□□□□ -0.23
HIF3A-209ENST00000525854 UPF3AQ9H1J1 476 aaKnown RBP13.63□□□□□ -0.23
HIF3A-209ENST00000525854 STARD7Q9NQZ5 370 aa13.63□□□□□ -0.23
HIF3A-209ENST00000525854 ELP1O95163 1332 aa13.63□□□□□ -0.23
HIF3A-209ENST00000525854 TRDNQ13061 729 aa13.62□□□□□ -0.23
HIF3A-209ENST00000525854 BAATQ14032 418 aaPredicted RBP13.62□□□□□ -0.23
HIF3A-209ENST00000525854 ASPRV1Q53RT3 343 aa13.62□□□□□ -0.23
HIF3A-209ENST00000525854 GNASQ5JWF2 1037 aa13.62□□□□□ -0.23
HIF3A-209ENST00000525854 CCSAPQ6IQ19 270 aaPredicted RBP13.62□□□□□ -0.23
HIF3A-209ENST00000525854 ENAHQ8N8S7 591 aaPredicted RBP13.62□□□□□ -0.23
HIF3A-209ENST00000525854 MPHOSPH6Q99547 160 aaKnown RBP13.62□□□□□ -0.23
HIF3A-209ENST00000525854 PDLIM7Q9NR12 457 aa13.62□□□□□ -0.23
HIF3A-209ENST00000525854 TNKSO95271 1327 aa13.62□□□□□ -0.23
HIF3A-209ENST00000525854 PTPDC1A2A3K4 754 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 DCDC2CA8MYV0 355 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 NFIBO00712 420 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 ADCY6O43306 1168 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 PQBP1O60828 265 aaKnown RBP13.61□□□□□ -0.23
HIF3A-209ENST00000525854 CLTBP09497 229 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 GOLGA8HP0CJ92 632 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 CHMLP26374 656 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 NKX3-2P78367 333 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 IQSEC1Q6DN90 963 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 RNF207Q6ZRF8 634 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 ANKRD33Q7Z3H0 272 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 MORC4Q8TE76 937 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 CLEC4DQ8WXI8 215 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 VTI1AQ96AJ9 217 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 LRCH3Q96II8 777 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 TOX2Q96NM4 488 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 AP5M1Q9H0R1 490 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 VTA1Q9NP79 307 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 Q9Y3F1 56 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 U3KPZ7 1027 aaPredicted RBP13.61□□□□□ -0.23
HIF3A-209ENST00000525854 MROH7Q68CQ1 1323 aa13.61□□□□□ -0.23
HIF3A-209ENST00000525854 MYADML2A6NDP7 307 aa13.6□□□□□ -0.23
HIF3A-209ENST00000525854 B4DLN1 442 aa13.6□□□□□ -0.23
HIF3A-209ENST00000525854 ZEB2O60315 1214 aa13.6□□□□□ -0.23
HIF3A-209ENST00000525854 ASGR1P07306 291 aa13.6□□□□□ -0.23
HIF3A-209ENST00000525854 PARP1P09874 1014 aaKnown RBP13.6□□□□□ -0.23
HIF3A-209ENST00000525854 MRPL12P52815 198 aaKnown RBP13.6□□□□□ -0.23
HIF3A-209ENST00000525854 IFIT1BQ5T764 474 aaKnown RBP13.6□□□□□ -0.23
HIF3A-209ENST00000525854 TLK2Q86UE8 772 aa13.6□□□□□ -0.23
HIF3A-209ENST00000525854 RGS22Q8NE09 1264 aa13.6□□□□□ -0.23
HIF3A-209ENST00000525854 MAF1Q9H063 256 aa13.6□□□□□ -0.23
HIF3A-209ENST00000525854 IL25Q9H293 177 aa13.6□□□□□ -0.23
HIF3A-209ENST00000525854 ASTN1O14525 1302 aa13.6□□□□□ -0.23
HIF3A-209ENST00000525854 LAMA4Q16363 1823 aa13.6□□□□□ -0.23
HIF3A-209ENST00000525854 A0A0U1RQG5 324 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-209ENST00000525854 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-209ENST00000525854 TRIM43BA6NCK2 446 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 KIAA0355O15063 1070 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 CABYRO75952 493 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 RAG1P15918 1043 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 CALML3P27482 149 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 ALDH5A1P51649 535 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-209ENST00000525854 RPS6P62753 249 aaKnown RBP13.59□□□□□ -0.23
HIF3A-209ENST00000525854 CDC37Q16543 378 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-209ENST00000525854 EEPD1Q7L9B9 569 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 SH3RF1Q7Z6J0 888 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 FBXO16Q8IX29 292 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-209ENST00000525854 DNERQ8NFT8 737 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 BADQ92934 168 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 TRIM43Q96BQ3 446 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-209ENST00000525854 UBA5Q9GZZ9 404 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 TMEM39AQ9NV64 488 aa13.59□□□□□ -0.23
HIF3A-209ENST00000525854 GNEQ9Y223 722 aaKnown RBP13.59□□□□□ -0.23
HIF3A-209ENST00000525854 CTAGE5O15320 804 aa13.58□□□□□ -0.24
HIF3A-209ENST00000525854 SGSM2O43147 1006 aa13.58□□□□□ -0.24
HIF3A-209ENST00000525854 DYNC1LI2O43237 492 aaPredicted RBP13.58□□□□□ -0.24
HIF3A-209ENST00000525854 DHX16O60231 1041 aaKnown RBP13.58□□□□□ -0.24
HIF3A-209ENST00000525854 SMPD1P17405 629 aa13.58□□□□□ -0.24
HIF3A-209ENST00000525854 PDE4DQ08499 809 aa13.58□□□□□ -0.24
HIF3A-209ENST00000525854 FSCN1Q16658 493 aaKnown RBP13.58□□□□□ -0.24
HIF3A-209ENST00000525854 USH1GQ495M9 461 aa13.58□□□□□ -0.24
HIF3A-209ENST00000525854 TAPT1Q6NXT6 567 aa13.58□□□□□ -0.24
HIF3A-209ENST00000525854 SLC30A10Q6XR72 485 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms