RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 BAATQ14032 418 aaPredicted RBP24.41■■□□□ 1.5
VPS28-203ENST00000524521 WTAPQ15007 396 aa24.41■■□□□ 1.5
VPS28-203ENST00000524521 LRRC41Q15345 812 aa24.41■■□□□ 1.5
VPS28-203ENST00000524521 ALPK3Q96L96 1907 aa24.41■■□□□ 1.5
VPS28-203ENST00000524521 WDR19Q8NEZ3 1342 aa24.4■■□□□ 1.5
VPS28-203ENST00000524521 PTPDC1A2A3K4 754 aa24.4■■□□□ 1.5
VPS28-203ENST00000524521 SLC27A2O14975 620 aa24.4■■□□□ 1.5
VPS28-203ENST00000524521 PGK1P00558 417 aa24.4■■□□□ 1.5
VPS28-203ENST00000524521 CDC37Q16543 378 aaPredicted RBP24.4■■□□□ 1.5
VPS28-203ENST00000524521 LRRC26Q2I0M4 334 aa24.4■■□□□ 1.5
VPS28-203ENST00000524521 USH1GQ495M9 461 aa24.4■■□□□ 1.5
VPS28-203ENST00000524521 TMEM67Q5HYA8 995 aa24.4■■□□□ 1.5
VPS28-203ENST00000524521 STAG2Q8N3U4 1231 aa24.4■■□□□ 1.5
VPS28-203ENST00000524521 CLEC4DQ8WXI8 215 aa24.4■■□□□ 1.5
VPS28-203ENST00000524521 LENG1Q96BZ8 264 aaPredicted RBP24.4■■□□□ 1.5
VPS28-203ENST00000524521 PURBQ96QR8 312 aaKnown RBP24.4■■□□□ 1.5
VPS28-203ENST00000524521 SENP2Q9HC62 589 aa24.4■■□□□ 1.5
VPS28-203ENST00000524521 COLQQ9Y215 455 aaPredicted RBP24.4■■□□□ 1.5
VPS28-203ENST00000524521 CDC45O75419 566 aa24.39■■□□□ 1.49
VPS28-203ENST00000524521 ATN1P54259 1190 aaPredicted RBP24.39■■□□□ 1.49
VPS28-203ENST00000524521 ANTXR2P58335 489 aa24.39■■□□□ 1.49
VPS28-203ENST00000524521 NECTIN1Q15223 517 aa24.39■■□□□ 1.49
VPS28-203ENST00000524521 CREB3L3Q68CJ9 461 aa24.39■■□□□ 1.49
VPS28-203ENST00000524521 MB21D2Q8IYB1 491 aaPredicted RBP24.39■■□□□ 1.49
VPS28-203ENST00000524521 MCM3APO60318 1980 aa24.39■■□□□ 1.49
VPS28-203ENST00000524521 KLRF2D3W0D1 207 aa24.38■■□□□ 1.49
VPS28-203ENST00000524521 ADCYAP1R1P41586 468 aa24.38■■□□□ 1.49
VPS28-203ENST00000524521 CCDC144BQ3MJ40 725 aa24.38■■□□□ 1.49
VPS28-203ENST00000524521 CHRDL2Q6WN34 429 aa24.38■■□□□ 1.49
VPS28-203ENST00000524521 RNF207Q6ZRF8 634 aa24.38■■□□□ 1.49
VPS28-203ENST00000524521 RNF180Q86T96 592 aa24.38■■□□□ 1.49
VPS28-203ENST00000524521 IGDCC4Q8TDY8 1250 aa24.38■■□□□ 1.49
VPS28-203ENST00000524521 JMJD4Q9H9V9 463 aa24.38■■□□□ 1.49
VPS28-203ENST00000524521 MAD2L2Q9UI95 211 aa24.38■■□□□ 1.49
VPS28-203ENST00000524521 ZMYND8Q9ULU4 1186 aaPredicted RBP24.38■■□□□ 1.49
VPS28-203ENST00000524521 DDX49Q9Y6V7 483 aaKnown RBP24.38■■□□□ 1.49
VPS28-203ENST00000524521 ASTN1O14525 1302 aa24.37■■□□□ 1.49
VPS28-203ENST00000524521 CALML3P27482 149 aa24.37■■□□□ 1.49
VPS28-203ENST00000524521 QRICH1Q2TAL8 776 aa24.37■■□□□ 1.49
VPS28-203ENST00000524521 FERMT2Q96AC1 680 aa24.37■■□□□ 1.49
VPS28-203ENST00000524521 ADD3Q9UEY8 706 aaKnown RBP24.37■■□□□ 1.49
VPS28-203ENST00000524521 PALM3A6NDB9 673 aaPredicted RBP24.36■■□□□ 1.49
VPS28-203ENST00000524521 HABP4Q5JVS0 413 aaKnown RBP24.36■■□□□ 1.49
VPS28-203ENST00000524521 SLC30A10Q6XR72 485 aa24.36■■□□□ 1.49
VPS28-203ENST00000524521 FBXO11Q86XK2 927 aa24.36■■□□□ 1.49
VPS28-203ENST00000524521 KATNBL1Q9H079 304 aa24.36■■□□□ 1.49
VPS28-203ENST00000524521 PRC1O43663 620 aa24.35■■□□□ 1.49
VPS28-203ENST00000524521 DUSP11O75319 330 aaKnown RBP24.35■■□□□ 1.49
VPS28-203ENST00000524521 SYN1P17600 705 aa24.35■■□□□ 1.49
VPS28-203ENST00000524521 MCM5P33992 734 aa24.35■■□□□ 1.49
VPS28-203ENST00000524521 GRM4Q14833 912 aa24.35■■□□□ 1.49
VPS28-203ENST00000524521 EEPD1Q7L9B9 569 aa24.35■■□□□ 1.49
VPS28-203ENST00000524521 CATIPQ7Z7H3 387 aa24.35■■□□□ 1.49
VPS28-203ENST00000524521 ABCB11O95342 1321 aa24.35■■□□□ 1.49
VPS28-203ENST00000524521 ADAMTS4O75173 837 aa24.34■■□□□ 1.49
VPS28-203ENST00000524521 ALDH5A1P51649 535 aaPredicted RBP24.34■■□□□ 1.49
VPS28-203ENST00000524521 RPS6P62753 249 aaKnown RBP24.34■■□□□ 1.49
VPS28-203ENST00000524521 TROAPQ12815 778 aa24.34■■□□□ 1.49
VPS28-203ENST00000524521 RNF20Q5VTR2 975 aa24.34■■□□□ 1.49
VPS28-203ENST00000524521 SLC39A5Q6ZMH5 540 aa24.34■■□□□ 1.49
VPS28-203ENST00000524521 NOL8Q76FK4 1167 aaKnown RBP24.34■■□□□ 1.49
VPS28-203ENST00000524521 GPHNQ9NQX3 736 aaPredicted RBP24.34■■□□□ 1.49
VPS28-203ENST00000524521 SYNRGQ9UMZ2 1314 aa24.34■■□□□ 1.49
VPS28-203ENST00000524521 ADCY6O43306 1168 aa24.33■■□□□ 1.49
VPS28-203ENST00000524521 TNFAIP2Q03169 654 aa24.33■■□□□ 1.49
VPS28-203ENST00000524521 RGS22Q8NE09 1264 aa24.33■■□□□ 1.49
VPS28-203ENST00000524521 LY9Q9HBG7 655 aa24.33■■□□□ 1.49
VPS28-203ENST00000524521 SPC25Q9HBM1 224 aa24.33■■□□□ 1.49
VPS28-203ENST00000524521 PHF24Q9UPV7 400 aa24.33■■□□□ 1.49
VPS28-203ENST00000524521 MRPL11Q9Y3B7 192 aaKnown RBP24.33■■□□□ 1.49
VPS28-203ENST00000524521 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.32■■□□□ 1.48
VPS28-203ENST00000524521 CENPBP07199 599 aaPredicted RBP24.32■■□□□ 1.48
VPS28-203ENST00000524521 C6orf222P0C671 652 aaPredicted RBP24.32■■□□□ 1.48
VPS28-203ENST00000524521 RTP1P59025 263 aa24.32■■□□□ 1.48
VPS28-203ENST00000524521 COL9A3Q14050 684 aaPredicted RBP24.32■■□□□ 1.48
VPS28-203ENST00000524521 NFXL1Q6ZNB6 911 aa24.32■■□□□ 1.48
VPS28-203ENST00000524521 FBXO16Q8IX29 292 aaPredicted RBP24.32■■□□□ 1.48
VPS28-203ENST00000524521 MORC4Q8TE76 937 aa24.32■■□□□ 1.48
VPS28-203ENST00000524521 NUP133Q8WUM0 1156 aa24.32■■□□□ 1.48
VPS28-203ENST00000524521 TBC1D5Q92609 795 aa24.32■■□□□ 1.48
VPS28-203ENST00000524521 MTA3Q9BTC8 594 aa24.32■■□□□ 1.48
VPS28-203ENST00000524521 AMNQ9BXJ7 453 aa24.32■■□□□ 1.48
VPS28-203ENST00000524521 PDGFCQ9NRA1 345 aa24.32■■□□□ 1.48
VPS28-203ENST00000524521 ATP11BQ9Y2G3 1177 aa24.32■■□□□ 1.48
VPS28-203ENST00000524521 IRX5P78411 483 aaPredicted RBP24.31■■□□□ 1.48
VPS28-203ENST00000524521 KCNA10Q16322 511 aa24.31■■□□□ 1.48
VPS28-203ENST00000524521 MCF2L2Q86YR7 1114 aa24.31■■□□□ 1.48
VPS28-203ENST00000524521 TMTC2Q8N394 836 aa24.31■■□□□ 1.48
VPS28-203ENST00000524521 KLHDC9Q8NEP7 349 aa24.31■■□□□ 1.48
VPS28-203ENST00000524521 TMEM87BQ96K49 555 aa24.31■■□□□ 1.48
VPS28-203ENST00000524521 TSEN34Q9BSV6 310 aaKnown RBP24.31■■□□□ 1.48
VPS28-203ENST00000524521 PPP4R2Q9NY27 417 aa24.31■■□□□ 1.48
VPS28-203ENST00000524521 RBM27Q9P2N5 1060 aaKnown RBP24.31■■□□□ 1.48
VPS28-203ENST00000524521 LCTP09848 1927 aa24.31■■□□□ 1.48
VPS28-203ENST00000524521 MYH6P13533 1939 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 LOC102724159A0A0B4J2E5 919 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 MYADML2A6NDP7 307 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 ZBTB5O15062 677 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 GJA9P57773 515 aa24.3■■□□□ 1.48
VPS28-203ENST00000524521 PWP2Q15269 919 aaKnown RBP24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms