RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 LZTS2Q9BRK4 669 aa25.56■■□□□ 1.68
VEGFA-217ENST00000518538 HMX1Q9NP08 348 aaPredicted RBP25.56■■□□□ 1.68
VEGFA-217ENST00000518538 BRPF3Q9ULD4 1205 aa25.56■■□□□ 1.68
VEGFA-217ENST00000518538 CENPFP49454 3210 aa25.56■■□□□ 1.68
VEGFA-217ENST00000518538 ZBTB5O15062 677 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 CYTH3O43739 400 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 GJB1P08034 283 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 SMARCA1P28370 1054 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 ANAPC15P60006 121 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 USH1GQ495M9 461 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 MICU3Q86XE3 530 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 FBXO11Q86XK2 927 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 FANCBQ8NB91 859 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 CLEC4DQ8WXI8 215 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 SPZ1Q9BXG8 430 aa25.55■■□□□ 1.68
VEGFA-217ENST00000518538 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.55■■□□□ 1.681e-8■■■■■ 27
VEGFA-217ENST00000518538 PAK6Q9NQU5 681 aaPredicted RBP25.55■■□□□ 1.68
VEGFA-217ENST00000518538 NFIBO00712 420 aa25.54■■□□□ 1.68
VEGFA-217ENST00000518538 SEC24BO95487 1268 aa25.54■■□□□ 1.68
VEGFA-217ENST00000518538 CYP2C19P33261 490 aa25.54■■□□□ 1.68
VEGFA-217ENST00000518538 RCAN1P53805 252 aa25.54■■□□□ 1.68
VEGFA-217ENST00000518538 ZNF467Q7Z7K2 595 aaPredicted RBP25.54■■□□□ 1.68
VEGFA-217ENST00000518538 RAB11FIP4Q86YS3 637 aa25.54■■□□□ 1.68
VEGFA-217ENST00000518538 CCDC144CPQ8IYA2 1237 aa25.54■■□□□ 1.68
VEGFA-217ENST00000518538 AGXT2Q9BYV1 514 aa25.54■■□□□ 1.68
VEGFA-217ENST00000518538 CYP39A1Q9NYL5 469 aa25.54■■□□□ 1.68
VEGFA-217ENST00000518538 CYP46A1Q9Y6A2 500 aa25.54■■□□□ 1.68
VEGFA-217ENST00000518538 ABCB11O95342 1321 aa25.54■■□□□ 1.68
VEGFA-217ENST00000518538 PLXNA1Q9UIW2 1896 aa25.53■■□□□ 1.68
VEGFA-217ENST00000518538 KLF18A0A0U1RQI7 1052 aa25.53■■□□□ 1.68
VEGFA-217ENST00000518538 POTEB2H3BUK9 544 aa25.53■■□□□ 1.68
VEGFA-217ENST00000518538 ZBTB43O43298 467 aa25.53■■□□□ 1.68
VEGFA-217ENST00000518538 NSMFQ6X4W1 530 aa25.53■■□□□ 1.68
VEGFA-217ENST00000518538 MSL3Q8N5Y2 521 aaKnown RBP25.53■■□□□ 1.68
VEGFA-217ENST00000518538 FAM133AQ8N9E0 248 aa25.53■■□□□ 1.68
VEGFA-217ENST00000518538 BRF1Q92994 677 aa25.53■■□□□ 1.68
VEGFA-217ENST00000518538 PIGSQ96S52 555 aa25.53■■□□□ 1.68
VEGFA-217ENST00000518538 AMNQ9BXJ7 453 aa25.53■■□□□ 1.68
VEGFA-217ENST00000518538 PLEKHA8P1O95397 391 aa25.52■■□□□ 1.68
VEGFA-217ENST00000518538 HOMER1Q86YM7 354 aa25.52■■□□□ 1.68
VEGFA-217ENST00000518538 FGD4Q96M96 766 aa25.52■■□□□ 1.68
VEGFA-217ENST00000518538 TINF2Q9BSI4 451 aa25.52■■□□□ 1.68
VEGFA-217ENST00000518538 RBM28Q9NW13 759 aaKnown RBP25.52■■□□□ 1.68
VEGFA-217ENST00000518538 SMCHD1A6NHR9 2005 aa25.52■■□□□ 1.68
VEGFA-217ENST00000518538 PPP1R11O60927 126 aaPredicted RBP25.51■■□□□ 1.67
VEGFA-217ENST00000518538 CYBAP13498 195 aa25.51■■□□□ 1.67
VEGFA-217ENST00000518538 GJA8P48165 433 aa25.51■■□□□ 1.67
VEGFA-217ENST00000518538 CNTN2Q02246 1040 aa25.51■■□□□ 1.67
VEGFA-217ENST00000518538 MAMDC4Q6UXC1 1216 aa25.51■■□□□ 1.67
VEGFA-217ENST00000518538 TMTC3Q6ZXV5 915 aa25.51■■□□□ 1.67
VEGFA-217ENST00000518538 SRBD1Q8N5C6 995 aaKnown RBP25.51■■□□□ 1.67
VEGFA-217ENST00000518538 IL17RAQ96F46 866 aa25.51■■□□□ 1.67
VEGFA-217ENST00000518538 MAF1Q9H063 256 aa25.51■■□□□ 1.67
VEGFA-217ENST00000518538 MRPL11Q9Y3B7 192 aaKnown RBP25.51■■□□□ 1.67
VEGFA-217ENST00000518538 PNMA6FA0A0J9YX94 578 aa25.5■■□□□ 1.67
VEGFA-217ENST00000518538 PTPDC1A2A3K4 754 aa25.5■■□□□ 1.67
VEGFA-217ENST00000518538 EN2P19622 333 aaPredicted RBP25.5■■□□□ 1.67
VEGFA-217ENST00000518538 CCND3P30281 292 aaPredicted RBP25.5■■□□□ 1.67
VEGFA-217ENST00000518538 APOBRQ0VD83 1088 aa25.5■■□□□ 1.67
VEGFA-217ENST00000518538 TRAF1Q13077 416 aa25.5■■□□□ 1.67
VEGFA-217ENST00000518538 BAATQ14032 418 aaPredicted RBP25.5■■□□□ 1.67
VEGFA-217ENST00000518538 RTN1Q16799 776 aa25.5■■□□□ 1.67
VEGFA-217ENST00000518538 RNF207Q6ZRF8 634 aa25.5■■□□□ 1.67
VEGFA-217ENST00000518538 RGS22Q8NE09 1264 aa25.5■■□□□ 1.67
VEGFA-217ENST00000518538 U2AF1L4Q8WU68 220 aaKnown RBP25.5■■□□□ 1.67
VEGFA-217ENST00000518538 RRP36Q96EU6 259 aaKnown RBP25.5■■□□□ 1.67
VEGFA-217ENST00000518538 DEFB118Q96PH6 123 aa25.5■■□□□ 1.67
VEGFA-217ENST00000518538 SYNGAP1Q96PV0 1343 aa25.5■■□□□ 1.67
VEGFA-217ENST00000518538 UPF3BQ9BZI7 483 aaKnown RBP25.5■■□□□ 1.67
VEGFA-217ENST00000518538 NRBP1Q9UHY1 535 aa25.5■■□□□ 1.67
VEGFA-217ENST00000518538 GOLGA8AA7E2F4 631 aa25.49■■□□□ 1.67
VEGFA-217ENST00000518538 GOLGA8BA8MQT2 603 aa25.49■■□□□ 1.67
VEGFA-217ENST00000518538 SGPL1O95470 568 aa25.49■■□□□ 1.67
VEGFA-217ENST00000518538 RGS19P49795 217 aa25.49■■□□□ 1.67
VEGFA-217ENST00000518538 NAP1L2Q9ULW6 460 aaPredicted RBP25.49■■□□□ 1.67
VEGFA-217ENST00000518538 PCDHA1Q9Y5I3 950 aa25.49■■□□□ 1.67
VEGFA-217ENST00000518538 MYH6P13533 1939 aa25.48■■□□□ 1.67
VEGFA-217ENST00000518538 SOWAHBA6NEL2 793 aa25.48■■□□□ 1.67
VEGFA-217ENST00000518538 CAPN2P17655 700 aa25.48■■□□□ 1.67
VEGFA-217ENST00000518538 RPS6P62753 249 aaKnown RBP25.48■■□□□ 1.67
VEGFA-217ENST00000518538 PPP2R5BQ15173 497 aa25.48■■□□□ 1.67
VEGFA-217ENST00000518538 SLC30A10Q6XR72 485 aa25.48■■□□□ 1.67
VEGFA-217ENST00000518538 MCF2L2Q86YR7 1114 aa25.48■■□□□ 1.67
VEGFA-217ENST00000518538 CMTR1Q8N1G2 835 aaKnown RBP25.48■■□□□ 1.67
VEGFA-217ENST00000518538 TRPV1Q8NER1 839 aa25.48■■□□□ 1.67
VEGFA-217ENST00000518538 SHISA4Q96DD7 197 aa25.48■■□□□ 1.67
VEGFA-217ENST00000518538 EVCP57679 992 aa25.47■■□□□ 1.67
VEGFA-217ENST00000518538 TOB2Q14106 344 aaPredicted RBP25.47■■□□□ 1.67
VEGFA-217ENST00000518538 PIBF1Q8WXW3 757 aa25.47■■□□□ 1.67
VEGFA-217ENST00000518538 CRISPLD2Q9H0B8 497 aa25.47■■□□□ 1.67
VEGFA-217ENST00000518538 PDRG1Q9NUG6 133 aa25.47■■□□□ 1.67
VEGFA-217ENST00000518538 SEC63Q9UGP8 760 aaKnown RBP25.47■■□□□ 1.67
VEGFA-217ENST00000518538 NID2Q14112 1375 aa25.46■■□□□ 1.67
VEGFA-217ENST00000518538 ASB14A6NK59 587 aa25.46■■□□□ 1.67
VEGFA-217ENST00000518538 CALML3P27482 149 aa25.46■■□□□ 1.67
VEGFA-217ENST00000518538 METAP2P50579 478 aaKnown RBP eCLIP25.46■■□□□ 1.677e-12■□□□□ 8.9
VEGFA-217ENST00000518538 PRAMEF19Q5SWL8 479 aa25.46■■□□□ 1.67
VEGFA-217ENST00000518538 ARMCX2Q7L311 632 aa25.46■■□□□ 1.67
VEGFA-217ENST00000518538 FAM217BQ9NTX9 383 aaPredicted RBP25.46■■□□□ 1.67
VEGFA-217ENST00000518538 ADD3Q9UEY8 706 aaKnown RBP25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms