RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 FAM133AQ8N9E0 248 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 RANBP17Q9H2T7 1088 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 SYNRGQ9UMZ2 1314 aa21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 SOX1O00570 391 aaPredicted RBP21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 EPB41L2O43491 1005 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 KDM4AO75164 1064 aa21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 SNX17Q15036 470 aa21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 CCDC144BQ3MJ40 725 aa21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 C1orf53Q5VUE5 145 aa21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 DGKHQ86XP1 1220 aa21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 LRCH3Q96II8 777 aa21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 TSEN34Q9BSV6 310 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 CYP39A1Q9NYL5 469 aa21.08■□□□□ 0.97
SQSTM1-209ENST00000504627 A0A1W2PQ45 241 aaPredicted RBP21.07■□□□□ 0.96
SQSTM1-209ENST00000504627 A0A1W2PQY0 241 aa21.07■□□□□ 0.96
SQSTM1-209ENST00000504627 C6orf222P0C671 652 aaPredicted RBP21.07■□□□□ 0.96
SQSTM1-209ENST00000504627 NOL8Q76FK4 1167 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-209ENST00000504627 NUP133Q8WUM0 1156 aa21.07■□□□□ 0.96
SQSTM1-209ENST00000504627 STARD7Q9NQZ5 370 aa21.07■□□□□ 0.96
SQSTM1-209ENST00000504627 SOWAHBA6NEL2 793 aa21.06■□□□□ 0.96
SQSTM1-209ENST00000504627 MOXD2PA6NHM9 499 aa21.06■□□□□ 0.96
SQSTM1-209ENST00000504627 ACLYP53396 1101 aa21.06■□□□□ 0.96
SQSTM1-209ENST00000504627 TLE2Q04725 743 aa21.06■□□□□ 0.96
SQSTM1-209ENST00000504627 ZNF543Q08ER8 600 aa21.06■□□□□ 0.96
SQSTM1-209ENST00000504627 KCNA10Q16322 511 aa21.06■□□□□ 0.96
SQSTM1-209ENST00000504627 LRIT3Q3SXY7 679 aa21.06■□□□□ 0.96
SQSTM1-209ENST00000504627 KAT14Q9H8E8 782 aa21.06■□□□□ 0.96
SQSTM1-209ENST00000504627 PNMA2Q9UL42 364 aa21.06■□□□□ 0.96
SQSTM1-209ENST00000504627 LAMA3Q16787 3333 aa21.06■□□□□ 0.96
SQSTM1-209ENST00000504627 B4E1Z4 1266 aa21.05■□□□□ 0.96
SQSTM1-209ENST00000504627 GPATCH4Q5T3I0 446 aaKnown RBP21.05■□□□□ 0.96
SQSTM1-209ENST00000504627 PCSK9Q8NBP7 692 aaKnown RBP21.05■□□□□ 0.96
SQSTM1-209ENST00000504627 KLHDC9Q8NEP7 349 aa21.05■□□□□ 0.96
SQSTM1-209ENST00000504627 KRT23Q9C075 422 aa21.05■□□□□ 0.96
SQSTM1-209ENST00000504627 PTPDC1A2A3K4 754 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 PQBP1O60828 265 aaKnown RBP21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 GOLGA8HP0CJ92 632 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 SNHG28P0DPA3 235 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 TNFAIP2Q03169 654 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 PNMA1Q8ND90 353 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 VTI1AQ96AJ9 217 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 GLT1D1Q96MS3 346 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 TBC1D32Q96NH3 1257 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 ZSCAN10Q96SZ4 725 aaPredicted RBP21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 IL25Q9H293 177 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 CNNM2Q9H8M5 875 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 PDLIM7Q9NR12 457 aa21.04■□□□□ 0.96
SQSTM1-209ENST00000504627 MCM3APO60318 1980 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 MYADML2A6NDP7 307 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 ADCY6O43306 1168 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 CLTBP09497 229 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 CST5P28325 142 aaPredicted RBP21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 GJA9P57773 515 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 BAATQ14032 418 aaPredicted RBP21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 GNASQ5JWF2 1037 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 EEPD1Q7L9B9 569 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 UBAC1Q9BSL1 405 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 KATNBL1Q9H079 304 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 ANO2Q9NQ90 1003 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 ZSWIM5Q9P217 1185 aa21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 ADD3Q9UEY8 706 aaKnown RBP21.03■□□□□ 0.96
SQSTM1-209ENST00000504627 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 TRIM43BA6NCK2 446 aa21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 NFIBO00712 420 aa21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 ASGR1P07306 291 aa21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 IRX5P78411 483 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 CCSAPQ6IQ19 270 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 KIAA1211Q6ZU35 1233 aa21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 SH3RF1Q7Z6J0 888 aa21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 BADQ92934 168 aa21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 TRIM43Q96BQ3 446 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 UBA5Q9GZZ9 404 aa21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 UPF3AQ9H1J1 476 aaKnown RBP21.02■□□□□ 0.96
SQSTM1-209ENST00000504627 TNKSO95271 1327 aa21.02■□□□□ 0.95
SQSTM1-209ENST00000504627 DCDC2CA8MYV0 355 aa21.01■□□□□ 0.95
SQSTM1-209ENST00000504627 FBXO16Q8IX29 292 aaPredicted RBP21.01■□□□□ 0.95
SQSTM1-209ENST00000504627 PURBQ96QR8 312 aaKnown RBP21.01■□□□□ 0.95
SQSTM1-209ENST00000504627 C22orf23Q9BZE7 217 aa21.01■□□□□ 0.95
SQSTM1-209ENST00000504627 AP5M1Q9H0R1 490 aa21.01■□□□□ 0.95
SQSTM1-209ENST00000504627 TMEM39AQ9NV64 488 aa21.01■□□□□ 0.95
SQSTM1-209ENST00000504627 DDX49Q9Y6V7 483 aaKnown RBP21.01■□□□□ 0.95
SQSTM1-209ENST00000504627 ASTN1O14525 1302 aa21.01■□□□□ 0.95
SQSTM1-209ENST00000504627 LAMA4Q16363 1823 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 RAG1P15918 1043 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 CALML3P27482 149 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 RBM25P49756 843 aaKnown RBP21■□□□□ 0.95
SQSTM1-209ENST00000504627 TRDNQ13061 729 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 USH1GQ495M9 461 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 GPR153Q6NV75 609 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 RNF207Q6ZRF8 634 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 ENAHQ8N8S7 591 aaPredicted RBP21■□□□□ 0.95
SQSTM1-209ENST00000504627 ANKS1AQ92625 1134 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 USP26Q9BXU7 913 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 LSG1Q9H089 658 aaKnown RBP21■□□□□ 0.95
SQSTM1-209ENST00000504627 CPVLQ9H3G5 476 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 VTA1Q9NP79 307 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 ELP1O95163 1332 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 WDR19Q8NEZ3 1342 aa21■□□□□ 0.95
SQSTM1-209ENST00000504627 DHX16O60231 1041 aaKnown RBP20.99■□□□□ 0.95
SQSTM1-209ENST00000504627 ALDH5A1P51649 535 aaPredicted RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms