RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ERCC3P19447 782 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 CDK8P49336 464 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 USP17L1Q7RTZ2 530 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 UBL4BQ8N7F7 174 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 OXER1Q8TDS5 423 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 GOLGA6AQ9NYA3 693 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 UTP11Q9Y3A2 253 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 SNAP23O00161 211 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 GAS7O60861 476 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 TCP1P17987 556 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 SEPT2Q15019 361 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 DOK7Q18PE1 504 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 IGDCC4Q8TDY8 1250 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 SOWAHDA6NJG2 315 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 EXOC3O60645 756 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 SLC35F6Q8N357 371 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 ATRIPQ8WXE1 791 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 METTL14Q9HCE5 456 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 ARMCX3Q9UH62 379 aaPredicted RBP11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 PCDHA1Q9Y5I3 950 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 COBLO75128 1261 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 CTDNEP1O95476 244 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 CCNE1P24864 410 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 DLGAP5Q15398 846 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 DIXDC1Q155Q3 683 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 GOLGA5Q8TBA6 731 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 SH3RF3Q8TEJ3 882 aaPredicted RBP11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 UBLCP1Q8WVY7 318 aaPredicted RBP11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 LRRC45Q96CN5 670 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 ATP6V0A2Q9Y487 856 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 ANTXR2P58335 489 aa11.9□□□□□ -0.51
LIMCH1-205ENST00000503057 PSMD2Q13200 908 aa11.9□□□□□ -0.51
LIMCH1-205ENST00000503057 KMT5BQ4FZB7 885 aa11.9□□□□□ -0.51
LIMCH1-205ENST00000503057 WDR44Q5JSH3 913 aa11.9□□□□□ -0.51
LIMCH1-205ENST00000503057 TPH2Q8IWU9 490 aa11.9□□□□□ -0.51
LIMCH1-205ENST00000503057 LARGE2Q8N3Y3 721 aa11.9□□□□□ -0.51
LIMCH1-205ENST00000503057 SERPINB13Q9UIV8 391 aa11.9□□□□□ -0.51
LIMCH1-205ENST00000503057 MFAP3LO75121 409 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 KCNQ4P56696 695 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 IQCB1Q15051 598 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 MAN2A1Q16706 1144 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 PTPN21Q16825 1174 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 UIMC1Q96RL1 719 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 AMNQ9BXJ7 453 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 MRPL11Q9Y3B7 192 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 CCDC169A6NNP5 214 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 POLR2MP0CAP2 368 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 PLCG1P19174 1290 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 TBC1D9BQ66K14 1250 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 CCDC50Q8IVM0 306 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 CNKSR2Q8WXI2 1034 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 SYNCQ9H7C4 482 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 TRPC5Q9UL62 973 aaPredicted RBP11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 PCDHB13Q9Y5F0 798 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 COL4A3BPQ9Y5P4 624 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 AKAP12Q02952 1782 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 BACH1O14867 736 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 EZRP15311 586 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 PRDX5P30044 214 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 CALCOCO2Q13137 446 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 ADAM9Q13443 819 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 GRM4Q14833 912 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 KRT31Q15323 416 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 PPP1R7Q15435 360 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 ZYXQ15942 572 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 CELF1Q92879 486 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 PPIP5K2O43314 1243 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 CEP104O60308 925 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 EEF2P13639 858 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 ABCB5Q2M3G0 1257 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 USP17L2Q6R6M4 530 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 GBP6Q6ZN66 633 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 CCDC170Q8IYT3 715 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 KIFC2Q96AC6 838 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 IFT74Q96LB3 600 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 KCNF1Q9H3M0 494 aa11.89□□□□□ -0.51
LIMCH1-205ENST00000503057 ZBED4O75132 1171 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 KIF4AO95239 1232 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 CYP2D6P10635 497 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 PPFIA1Q13136 1202 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 ORC2Q13416 577 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 PEX26Q7Z412 305 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 FNBP1Q96RU3 617 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 KIAA1024Q9UPX6 916 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 ACTN4O43707 911 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 ACTN2P35609 894 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 KIAA0825Q8IV33 1275 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 ANKS4BQ8N8V4 417 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 TCHPQ9BT92 498 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 DHX36Q9H2U1 1008 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 FAM184BQ9ULE4 1060 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 KIF1AQ12756 1690 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 DDX39AO00148 427 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 KRT5P13647 590 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 FDPSP14324 419 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 POLR2FP61218 127 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 SEMA3FQ13275 785 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms