RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 GH2P01242 217 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PRR16Q569H4 304 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ZNF772Q68DY9 489 aaPredicted RBP11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 NSMFQ6X4W1 530 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 HINFPQ9BQA5 517 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 BRIP1Q9BX63 1249 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CRKP46108 304 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 LRRC41Q15345 812 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 EARS2Q5JPH6 523 aaKnown RBP11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SLFN13Q68D06 897 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 FMNL3Q8IVF7 1028 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 DYDC1Q8WWB3 177 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 HPS3Q969F9 1004 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 BAG1Q99933 345 aaPredicted RBP11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 JPH2Q9BR39 696 aaPredicted RBP11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 RAB34Q9BZG1 259 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SLC39A2Q9NP94 309 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ADAMTSL3P82987 1691 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 MEIS1O00470 390 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ECE2O60344 883 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TUBBP07437 444 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ADCY7P51828 1080 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CCDC144BQ3MJ40 725 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 FAM212AQ96EL1 285 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ZNHIT6Q9NWK9 470 aaKnown RBP11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 MROH7-TTC4A0A0A0MT08 1334 aa11.97□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 AP5Z1O43299 807 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 NPR1P16066 1061 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 POLD1P28340 1107 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TMEM132AQ24JP5 1023 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 C12orf60Q5U649 245 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CACNA2D4Q7Z3S7 1137 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 FMR1NBQ8N0W7 255 aaPredicted RBP11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 KCNB2Q92953 911 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 UTRNP46939 3433 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SEMA3EO15041 775 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CCT5P48643 541 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TUBB4BP68371 445 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CALCRLQ16602 461 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ATL3Q6DD88 541 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 MASTLQ96GX5 879 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PSTPIP2Q9H939 334 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CNTNAP4Q9C0A0 1308 aa11.96□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 MATR3P43243 847 aaKnown RBP eCLIP11.96□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PTPROQ16827 1216 aa11.96□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 MUM1L1Q5H9M0 696 aa11.96□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 RC3H1Q5TC82 1133 aaKnown RBP11.96□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 KANK3Q6NY19 840 aa11.96□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ILDR1Q86SU0 546 aaPredicted RBP11.96□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CABP7Q86V35 215 aa11.96□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 NIM1KQ8IY84 436 aa11.96□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TMEM87AQ8NBN3 555 aa11.96□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 POTEMA6NI47 508 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 USP17L10C9JJH3 530 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 MYCLP12524 364 aaPredicted RBP11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 FKBP15Q5T1M5 1219 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SLC30A10Q6XR72 485 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SGMS1Q86VZ5 419 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PARD6BQ9BYG5 372 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 GDAQ9Y2T3 454 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ABCB5Q2M3G0 1257 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 B4GALNT4Q76KP1 1039 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TADA2BQ86TJ2 420 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 RABGGTAQ92696 567 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SH2D3AQ9BRG2 576 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 EPC1Q9H2F5 836 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TACC3Q9Y6A5 838 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 GOLGA6CA6NDK9 693 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PSMA7O14818 248 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 GOLGA6DP0CG33 693 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 MRPL12P52815 198 aaKnown RBP11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SHROOM1Q2M3G4 852 aaPredicted RBP11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 IGSF22Q8N9C0 903 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 RDH13Q8NBN7 331 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 FAM204AQ9H8W3 233 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 GOLGA6AQ9NYA3 693 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 FLT1P17948 1338 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SPATA31A6Q5VVP1 1343 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PNPLA7Q6ZV29 1317 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SYNRGQ9UMZ2 1314 aa11.95□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ARHGAP6O43182 974 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 GCKP35557 465 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ALX1Q15699 326 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 WWC2Q6AWC2 1192 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CCDC121Q6ZUS5 278 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 BCAS4Q8TDM0 211 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 RSRC1Q96IZ7 334 aaKnown RBP11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 GDAP1L1Q96MZ0 367 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PSMB7Q99436 277 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 FOXP1Q9H334 677 aaPredicted RBP11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SUFUQ9UMX1 484 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 DDAH1O94760 285 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CDC25BP30305 580 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CNKSR1Q969H4 720 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 KANSL2Q9H9L4 492 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PPARDQ03181 441 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TROAPQ12815 778 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CC2D1AQ6P1N0 951 aaPredicted RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms