RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZHX1Q9UKY1 873 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-214ENST00000490398 SYNGAP1Q96PV0 1343 aa21.19■□□□□ 0.98
COL9A3-214ENST00000490398 PRC1O43663 620 aa21.18■□□□□ 0.98
COL9A3-214ENST00000490398 MSCO60682 206 aa21.18■□□□□ 0.98
COL9A3-214ENST00000490398 IRX5P78411 483 aaPredicted RBP21.18■□□□□ 0.98
COL9A3-214ENST00000490398 WTAPQ15007 396 aa21.18■□□□□ 0.98
COL9A3-214ENST00000490398 USH1GQ495M9 461 aa21.18■□□□□ 0.98
COL9A3-214ENST00000490398 ARMCX2Q7L311 632 aa21.18■□□□□ 0.98
COL9A3-214ENST00000490398 TBC1D5Q92609 795 aa21.18■□□□□ 0.98
COL9A3-214ENST00000490398 LY9Q9HBG7 655 aa21.18■□□□□ 0.98
COL9A3-214ENST00000490398 PPP4R2Q9NY27 417 aa21.18■□□□□ 0.98
COL9A3-214ENST00000490398 NRBP1Q9UHY1 535 aa21.18■□□□□ 0.98
COL9A3-214ENST00000490398 PALM3A6NDB9 673 aaPredicted RBP21.17■□□□□ 0.98
COL9A3-214ENST00000490398 MYCNP04198 464 aaPredicted RBP21.17■□□□□ 0.98
COL9A3-214ENST00000490398 PTGS1P23219 599 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 TROAPQ12815 778 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 ACVR2BQ13705 512 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 GRM4Q14833 912 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 QRICH1Q2TAL8 776 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 RASEFQ8IZ41 740 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 MSL3Q8N5Y2 521 aaKnown RBP21.17■□□□□ 0.98
COL9A3-214ENST00000490398 LRRC2Q9BYS8 371 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 CNPY2Q9Y2B0 182 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 WDR19Q8NEZ3 1342 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 ALPK3Q96L96 1907 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 CEP290O15078 2479 aa21.17■□□□□ 0.98
COL9A3-214ENST00000490398 KLRF2D3W0D1 207 aa21.16■□□□□ 0.98
COL9A3-214ENST00000490398 PGK1P00558 417 aa21.16■□□□□ 0.98
COL9A3-214ENST00000490398 LRRC26Q2I0M4 334 aa21.16■□□□□ 0.98
COL9A3-214ENST00000490398 MYL10Q9BUA6 226 aa21.16■□□□□ 0.98
COL9A3-214ENST00000490398 LCTP09848 1927 aa21.16■□□□□ 0.98
COL9A3-214ENST00000490398 DNM1LO00429 736 aa21.15■□□□□ 0.98
COL9A3-214ENST00000490398 SH2B2O14492 632 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-214ENST00000490398 PPP1R11O60927 126 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-214ENST00000490398 CENPBP07199 599 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-214ENST00000490398 LRRC41Q15345 812 aa21.15■□□□□ 0.98
COL9A3-214ENST00000490398 TMEM63BQ5T3F8 832 aa21.15■□□□□ 0.98
COL9A3-214ENST00000490398 SENP6Q9GZR1 1112 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-214ENST00000490398 XPNPEP3Q9NQH7 507 aa21.15■□□□□ 0.98
COL9A3-214ENST00000490398 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.14■□□□□ 0.97
COL9A3-214ENST00000490398 ERICH2A1L162 156 aa21.14■□□□□ 0.97
COL9A3-214ENST00000490398 PTPDC1A2A3K4 754 aa21.14■□□□□ 0.97
COL9A3-214ENST00000490398 CYTH3O43739 400 aa21.14■□□□□ 0.97
COL9A3-214ENST00000490398 DHX16O60231 1041 aaKnown RBP21.14■□□□□ 0.97
COL9A3-214ENST00000490398 EVI5O60447 810 aa21.14■□□□□ 0.97
COL9A3-214ENST00000490398 RARBP10826 455 aa21.14■□□□□ 0.97
COL9A3-214ENST00000490398 AKR1A1P14550 325 aa21.14■□□□□ 0.97
COL9A3-214ENST00000490398 CALML3P27482 149 aa21.14■□□□□ 0.97
COL9A3-214ENST00000490398 RPS6P62753 249 aaKnown RBP21.14■□□□□ 0.97
COL9A3-214ENST00000490398 ADCK5Q3MIX3 580 aa21.14■□□□□ 0.97
COL9A3-214ENST00000490398 C7orf61Q8IZ16 206 aa21.14■□□□□ 0.97
COL9A3-214ENST00000490398 MYADML2A6NDP7 307 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 ADAMTS4O75173 837 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 MCM5P33992 734 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 ATN1P54259 1190 aaPredicted RBP21.13■□□□□ 0.97
COL9A3-214ENST00000490398 SART3Q15020 963 aaKnown RBP21.13■□□□□ 0.97
COL9A3-214ENST00000490398 CCDC144BQ3MJ40 725 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 RNF207Q6ZRF8 634 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 EEPD1Q7L9B9 569 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 RAB11FIP4Q86YS3 637 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 ARRDC4Q8NCT1 418 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 MTMR8Q96EF0 704 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 TCEANC2Q96MN5 208 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 ABHD16BQ9H3Z7 469 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 PDGFCQ9NRA1 345 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 FAM184BQ9ULE4 1060 aa21.13■□□□□ 0.97
COL9A3-214ENST00000490398 MCM3APO60318 1980 aa21.12■□□□□ 0.97
COL9A3-214ENST00000490398 RXRAP19793 462 aa21.12■□□□□ 0.97
COL9A3-214ENST00000490398 ADCYAP1R1P41586 468 aa21.12■□□□□ 0.97
COL9A3-214ENST00000490398 CASC1Q6TDU7 716 aa21.12■□□□□ 0.97
COL9A3-214ENST00000490398 FBXO16Q8IX29 292 aaPredicted RBP21.12■□□□□ 0.97
COL9A3-214ENST00000490398 ZNF654Q8IZM8 581 aa21.12■□□□□ 0.97
COL9A3-214ENST00000490398 NUP133Q8WUM0 1156 aa21.12■□□□□ 0.97
COL9A3-214ENST00000490398 FERMT2Q96AC1 680 aa21.12■□□□□ 0.97
COL9A3-214ENST00000490398 PIGSQ96S52 555 aa21.12■□□□□ 0.97
COL9A3-214ENST00000490398 COL20A1Q9P218 1284 aa21.12■□□□□ 0.97
COL9A3-214ENST00000490398 SYNRGQ9UMZ2 1314 aa21.11■□□□□ 0.97
COL9A3-214ENST00000490398 OPLAHO14841 1288 aa21.11■□□□□ 0.97
COL9A3-214ENST00000490398 ALDH5A1P51649 535 aaPredicted RBP21.11■□□□□ 0.97
COL9A3-214ENST00000490398 TAPT1Q6NXT6 567 aa21.11■□□□□ 0.97
COL9A3-214ENST00000490398 CATIPQ7Z7H3 387 aa21.11■□□□□ 0.97
COL9A3-214ENST00000490398 FBXO11Q86XK2 927 aa21.11■□□□□ 0.97
COL9A3-214ENST00000490398 HOMER1Q86YM7 354 aa21.11■□□□□ 0.97
COL9A3-214ENST00000490398 MORC4Q8TE76 937 aa21.11■□□□□ 0.97
COL9A3-214ENST00000490398 RIOX1Q9H6W3 641 aa21.11■□□□□ 0.97
COL9A3-214ENST00000490398 ZMYND8Q9ULU4 1186 aaPredicted RBP21.11■□□□□ 0.97
COL9A3-214ENST00000490398 COLQQ9Y215 455 aaPredicted RBP21.11■□□□□ 0.97
COL9A3-214ENST00000490398 ABCB11O95342 1321 aa21.1■□□□□ 0.97
COL9A3-214ENST00000490398 ASB14A6NK59 587 aa21.1■□□□□ 0.97
COL9A3-214ENST00000490398 CPA1P15085 419 aa21.1■□□□□ 0.97
COL9A3-214ENST00000490398 SYN1P17600 705 aa21.1■□□□□ 0.97
COL9A3-214ENST00000490398 ERICH6BQ5W0A0 696 aa21.1■□□□□ 0.97
COL9A3-214ENST00000490398 PIBF1Q8WXW3 757 aa21.1■□□□□ 0.97
COL9A3-214ENST00000490398 NR2E3Q9Y5X4 410 aa21.1■□□□□ 0.97
COL9A3-214ENST00000490398 LRRC37A2A6NM11 1700 aa21.09■□□□□ 0.97
COL9A3-214ENST00000490398 KBTBD13C9JR72 458 aa21.09■□□□□ 0.97
COL9A3-214ENST00000490398 CTAGE5O15320 804 aa21.09■□□□□ 0.97
COL9A3-214ENST00000490398 PLEKHA8P1O95397 391 aa21.09■□□□□ 0.97
COL9A3-214ENST00000490398 EXOSC10Q01780 885 aaKnown RBP21.09■□□□□ 0.97
COL9A3-214ENST00000490398 CCSAPQ6IQ19 270 aaPredicted RBP21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms