RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.6□□□□□ -0.39
VPS13D-210ENST00000489961 DPP9Q86TI2 863 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 CMTR1Q8N1G2 835 aaKnown RBP12.6□□□□□ -0.39
VPS13D-210ENST00000489961 ANKRD35Q8N283 1001 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 CCDC82Q8N4S0 544 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 PIBF1Q8WXW3 757 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 DDX11Q96FC9 970 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 SLKQ9H2G2 1235 aaPredicted RBP12.6□□□□□ -0.39
VPS13D-210ENST00000489961 GJD2Q9UKL4 321 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 SMCHD1A6NHR9 2005 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 RBBP6Q7Z6E9 1792 aaKnown RBP12.59□□□□□ -0.39
VPS13D-210ENST00000489961 CPLX1O14810 134 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 ST18O60284 1047 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 CYP2B6P20813 491 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 ADORA2AP29274 412 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 ADD1P35611 737 aaKnown RBP12.59□□□□□ -0.39
VPS13D-210ENST00000489961 STK3Q13188 491 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 COL13A1Q5TAT6 717 aaPredicted RBP12.59□□□□□ -0.39
VPS13D-210ENST00000489961 CPLX2Q6PUV4 134 aaKnown RBP12.59□□□□□ -0.39
VPS13D-210ENST00000489961 NOL8Q76FK4 1167 aaKnown RBP12.59□□□□□ -0.39
VPS13D-210ENST00000489961 APBA2Q99767 749 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 MCOLN1Q9GZU1 580 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 FAM217BQ9NTX9 383 aaPredicted RBP12.59□□□□□ -0.39
VPS13D-210ENST00000489961 TPCN1Q9ULQ1 816 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 MRPL11Q9Y3B7 192 aaKnown RBP12.59□□□□□ -0.39
VPS13D-210ENST00000489961 PCDHA1Q9Y5I3 950 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 PTCH2Q9Y6C5 1203 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 PLXNA1Q9UIW2 1896 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 PFASO15067 1338 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 CNTNAP5Q8WYK1 1306 aa12.59□□□□□ -0.39
VPS13D-210ENST00000489961 PFKFB2O60825 505 aa12.58□□□□□ -0.4
VPS13D-210ENST00000489961 XRCC5P13010 732 aaKnown RBP12.58□□□□□ -0.4
VPS13D-210ENST00000489961 TAL1P17542 331 aaPredicted RBP12.58□□□□□ -0.4
VPS13D-210ENST00000489961 AKAP17AQ02040 695 aaKnown RBP12.58□□□□□ -0.4
VPS13D-210ENST00000489961 MUM1L1Q5H9M0 696 aa12.58□□□□□ -0.4
VPS13D-210ENST00000489961 TRMT44Q8IYL2 757 aaKnown RBP12.58□□□□□ -0.4
VPS13D-210ENST00000489961 SLAIN1Q8ND83 568 aa12.58□□□□□ -0.4
VPS13D-210ENST00000489961 USP6NLQ92738 828 aa12.58□□□□□ -0.4
VPS13D-210ENST00000489961 NCOA5Q9HCD5 579 aaKnown RBP12.58□□□□□ -0.4
VPS13D-210ENST00000489961 RBM27Q9P2N5 1060 aaKnown RBP12.58□□□□□ -0.4
VPS13D-210ENST00000489961 LIMCH1Q9UPQ0 1083 aa12.58□□□□□ -0.4
VPS13D-210ENST00000489961 NFIBO00712 420 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 ADCY3O60266 1144 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 PPP1R11O60927 126 aaPredicted RBP12.57□□□□□ -0.4
VPS13D-210ENST00000489961 CDKL5O76039 1030 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 HOXC6P09630 235 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 IFNAR1P17181 557 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 GRK4P32298 578 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 FUT2Q10981 343 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 SLC9C1Q4G0N8 1177 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 NSMFQ6X4W1 530 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 MCF2L2Q86YR7 1114 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 PXYLP1Q8TE99 480 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 CLEC4DQ8WXI8 215 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 ZSCAN31Q96LW9 406 aaPredicted RBP12.57□□□□□ -0.4
VPS13D-210ENST00000489961 MAF1Q9H063 256 aa12.57□□□□□ -0.4
VPS13D-210ENST00000489961 A1CFQ9NQ94 594 aaKnown RBP12.57□□□□□ -0.4
VPS13D-210ENST00000489961 V9GY48 417 aaPredicted RBP12.57□□□□□ -0.4
VPS13D-210ENST00000489961 hCG_1642624A0A1W2PR95 340 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 PTPDC1A2A3K4 754 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 POTEB2H3BUK9 544 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 hCG_1984214I3L0E3 225 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 COBLO75128 1261 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 PGK2P07205 417 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 SCRN1Q12765 414 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 ME3Q16798 604 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 RNF207Q6ZRF8 634 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 TRIM22Q8IYM9 498 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 ZNF713Q8N859 430 aaPredicted RBP12.56□□□□□ -0.4
VPS13D-210ENST00000489961 RGS22Q8NE09 1264 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 NPLOC4Q8TAT6 608 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 RNF26Q9BY78 433 aaPredicted RBP12.56□□□□□ -0.4
VPS13D-210ENST00000489961 CYP39A1Q9NYL5 469 aa12.56□□□□□ -0.4
VPS13D-210ENST00000489961 BIN2Q9UBW5 565 aaPredicted RBP12.56□□□□□ -0.4
VPS13D-210ENST00000489961 DIS3Q9Y2L1 958 aaKnown RBP12.56□□□□□ -0.4
VPS13D-210ENST00000489961 DNAJC25-GNG10A0A024R161 153 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 PRPF3O43395 683 aaKnown RBP12.55□□□□□ -0.4
VPS13D-210ENST00000489961 HMGCRP04035 888 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 ELNP15502 786 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 MCM2P49736 904 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 SSRP1Q08945 709 aaKnown RBP12.55□□□□□ -0.4
VPS13D-210ENST00000489961 BAATQ14032 418 aaPredicted RBP12.55□□□□□ -0.4
VPS13D-210ENST00000489961 NTRK3Q16288 839 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 ZNF792Q3KQV3 632 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 HEATR3Q7Z4Q2 680 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 SAMD3Q8N6K7 520 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 PHKBQ93100 1093 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 GTF3C6Q969F1 213 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 MAML3Q96JK9 1138 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 SLC26A6Q9BXS9 759 aa12.55□□□□□ -0.4
VPS13D-210ENST00000489961 SH2B1Q9NRF2 756 aaPredicted RBP12.55□□□□□ -0.4
VPS13D-210ENST00000489961 MAP3K20Q9NYL2 800 aaKnown RBP12.55□□□□□ -0.4
VPS13D-210ENST00000489961 LARGE1O95461 756 aa12.54□□□□□ -0.4
VPS13D-210ENST00000489961 CFBP00751 764 aa12.54□□□□□ -0.4
VPS13D-210ENST00000489961 SCG2P13521 617 aa12.54□□□□□ -0.4
VPS13D-210ENST00000489961 CALML3P27482 149 aa12.54□□□□□ -0.4
VPS13D-210ENST00000489961 RPS6P62753 249 aaKnown RBP12.54□□□□□ -0.4
VPS13D-210ENST00000489961 UBXN2AP68543 259 aa12.54□□□□□ -0.4
VPS13D-210ENST00000489961 CCL14Q16627 93 aa12.54□□□□□ -0.4
VPS13D-210ENST00000489961 PFKFB3Q16875 520 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms