RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 ACVR2BQ13705 512 aa24.73■■□□□ 1.55
LIME1-207ENST00000489212 NECTIN1Q15223 517 aa24.73■■□□□ 1.55
LIME1-207ENST00000489212 LRRC41Q15345 812 aa24.73■■□□□ 1.55
LIME1-207ENST00000489212 CDC37Q16543 378 aaPredicted RBP24.73■■□□□ 1.55
LIME1-207ENST00000489212 ARRDC4Q8NCT1 418 aa24.73■■□□□ 1.55
LIME1-207ENST00000489212 SENP6Q9GZR1 1112 aaPredicted RBP24.73■■□□□ 1.55
LIME1-207ENST00000489212 KATNBL1Q9H079 304 aa24.73■■□□□ 1.55
LIME1-207ENST00000489212 CDC45O75419 566 aa24.72■■□□□ 1.55
LIME1-207ENST00000489212 RARBP10826 455 aa24.72■■□□□ 1.55
LIME1-207ENST00000489212 BAATQ14032 418 aaPredicted RBP24.72■■□□□ 1.55
LIME1-207ENST00000489212 LRRC26Q2I0M4 334 aa24.72■■□□□ 1.55
LIME1-207ENST00000489212 CREB3L3Q68CJ9 461 aa24.72■■□□□ 1.55
LIME1-207ENST00000489212 C7orf61Q8IZ16 206 aa24.72■■□□□ 1.55
LIME1-207ENST00000489212 IGDCC4Q8TDY8 1250 aa24.72■■□□□ 1.55
LIME1-207ENST00000489212 XPNPEP3Q9NQH7 507 aa24.72■■□□□ 1.55
LIME1-207ENST00000489212 MAD2L2Q9UI95 211 aa24.72■■□□□ 1.55
LIME1-207ENST00000489212 ADCY6O43306 1168 aa24.71■■□□□ 1.55
LIME1-207ENST00000489212 PGK1P00558 417 aa24.71■■□□□ 1.55
LIME1-207ENST00000489212 MYCNP04198 464 aaPredicted RBP24.71■■□□□ 1.55
LIME1-207ENST00000489212 WTAPQ15007 396 aa24.71■■□□□ 1.55
LIME1-207ENST00000489212 ABHD16BQ9H3Z7 469 aa24.71■■□□□ 1.55
LIME1-207ENST00000489212 JMJD4Q9H9V9 463 aa24.71■■□□□ 1.55
LIME1-207ENST00000489212 GPHNQ9NQX3 736 aaPredicted RBP24.71■■□□□ 1.55
LIME1-207ENST00000489212 PNMA2Q9UL42 364 aa24.71■■□□□ 1.55
LIME1-207ENST00000489212 TRIOBPQ9H2D6 2365 aa24.7■■□□□ 1.54
LIME1-207ENST00000489212 ERICH2A1L162 156 aa24.7■■□□□ 1.54
LIME1-207ENST00000489212 PALM3A6NDB9 673 aaPredicted RBP24.7■■□□□ 1.54
LIME1-207ENST00000489212 USH1GQ495M9 461 aa24.7■■□□□ 1.54
LIME1-207ENST00000489212 TMEM67Q5HYA8 995 aa24.7■■□□□ 1.54
LIME1-207ENST00000489212 SLC30A10Q6XR72 485 aa24.7■■□□□ 1.54
LIME1-207ENST00000489212 VAT1LQ9HCJ6 419 aa24.7■■□□□ 1.54
LIME1-207ENST00000489212 FAM184BQ9ULE4 1060 aa24.7■■□□□ 1.54
LIME1-207ENST00000489212 LRRC37A2A6NM11 1700 aa24.69■■□□□ 1.54
LIME1-207ENST00000489212 MYH6P13533 1939 aa24.69■■□□□ 1.54
LIME1-207ENST00000489212 PTPDC1A2A3K4 754 aa24.69■■□□□ 1.54
LIME1-207ENST00000489212 ASB14A6NK59 587 aa24.69■■□□□ 1.54
LIME1-207ENST00000489212 KBTBD13C9JR72 458 aa24.69■■□□□ 1.54
LIME1-207ENST00000489212 TROAPQ12815 778 aa24.69■■□□□ 1.54
LIME1-207ENST00000489212 GRM4Q14833 912 aa24.69■■□□□ 1.54
LIME1-207ENST00000489212 SART3Q15020 963 aaKnown RBP24.69■■□□□ 1.54
LIME1-207ENST00000489212 SLC35G1Q2M3R5 365 aa24.69■■□□□ 1.54
LIME1-207ENST00000489212 QRICH1Q2TAL8 776 aa24.69■■□□□ 1.54
LIME1-207ENST00000489212 CCDC144BQ3MJ40 725 aa24.69■■□□□ 1.54
LIME1-207ENST00000489212 COLQQ9Y215 455 aaPredicted RBP24.69■■□□□ 1.54
LIME1-207ENST00000489212 BAZ2BQ9UIF8 2168 aaKnown RBP24.69■■□□□ 1.54
LIME1-207ENST00000489212 KLRF2D3W0D1 207 aa24.68■■□□□ 1.54
LIME1-207ENST00000489212 ADAMTS4O75173 837 aa24.68■■□□□ 1.54
LIME1-207ENST00000489212 ATN1P54259 1190 aaPredicted RBP24.68■■□□□ 1.54
LIME1-207ENST00000489212 LY9Q9HBG7 655 aa24.68■■□□□ 1.54
LIME1-207ENST00000489212 SYNRGQ9UMZ2 1314 aa24.67■■□□□ 1.54
LIME1-207ENST00000489212 PRC1O43663 620 aa24.67■■□□□ 1.54
LIME1-207ENST00000489212 DHX16O60231 1041 aaKnown RBP24.67■■□□□ 1.54
LIME1-207ENST00000489212 CALML3P27482 149 aa24.67■■□□□ 1.54
LIME1-207ENST00000489212 ADCYAP1R1P41586 468 aa24.67■■□□□ 1.54
LIME1-207ENST00000489212 RPS6P62753 249 aaKnown RBP24.67■■□□□ 1.54
LIME1-207ENST00000489212 CASC1Q6TDU7 716 aa24.67■■□□□ 1.54
LIME1-207ENST00000489212 CHRDL2Q6WN34 429 aa24.67■■□□□ 1.54
LIME1-207ENST00000489212 RNF207Q6ZRF8 634 aa24.67■■□□□ 1.54
LIME1-207ENST00000489212 MORC4Q8TE76 937 aa24.67■■□□□ 1.54
LIME1-207ENST00000489212 MTMR8Q96EF0 704 aa24.67■■□□□ 1.54
LIME1-207ENST00000489212 PCDH10Q9P2E7 1040 aa24.67■■□□□ 1.54
LIME1-207ENST00000489212 ZMYND8Q9ULU4 1186 aaPredicted RBP24.67■■□□□ 1.54
LIME1-207ENST00000489212 DUSP11O75319 330 aaKnown RBP24.66■■□□□ 1.54
LIME1-207ENST00000489212 ALDH5A1P51649 535 aaPredicted RBP24.66■■□□□ 1.54
LIME1-207ENST00000489212 IRX5P78411 483 aaPredicted RBP24.66■■□□□ 1.54
LIME1-207ENST00000489212 TBC1D5Q92609 795 aa24.66■■□□□ 1.54
LIME1-207ENST00000489212 FERMT2Q96AC1 680 aa24.66■■□□□ 1.54
LIME1-207ENST00000489212 ABCB11O95342 1321 aa24.65■■□□□ 1.54
LIME1-207ENST00000489212 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.65■■□□□ 1.54
LIME1-207ENST00000489212 MYADML2A6NDP7 307 aa24.65■■□□□ 1.54
LIME1-207ENST00000489212 MCM5P33992 734 aa24.65■■□□□ 1.54
LIME1-207ENST00000489212 HABP4Q5JVS0 413 aaKnown RBP24.65■■□□□ 1.54
LIME1-207ENST00000489212 EEPD1Q7L9B9 569 aa24.65■■□□□ 1.54
LIME1-207ENST00000489212 RNF180Q86T96 592 aa24.65■■□□□ 1.54
LIME1-207ENST00000489212 FBXO11Q86XK2 927 aa24.65■■□□□ 1.54
LIME1-207ENST00000489212 FBXO16Q8IX29 292 aaPredicted RBP24.65■■□□□ 1.54
LIME1-207ENST00000489212 KLHDC9Q8NEP7 349 aa24.65■■□□□ 1.54
LIME1-207ENST00000489212 PHF24Q9UPV7 400 aa24.65■■□□□ 1.54
LIME1-207ENST00000489212 SH2B2O14492 632 aaPredicted RBP24.64■■□□□ 1.54
LIME1-207ENST00000489212 PPP1R11O60927 126 aaPredicted RBP24.64■■□□□ 1.54
LIME1-207ENST00000489212 SYN1P17600 705 aa24.64■■□□□ 1.54
LIME1-207ENST00000489212 TAPT1Q6NXT6 567 aa24.64■■□□□ 1.54
LIME1-207ENST00000489212 SLC39A5Q6ZMH5 540 aa24.64■■□□□ 1.54
LIME1-207ENST00000489212 CATIPQ7Z7H3 387 aa24.64■■□□□ 1.54
LIME1-207ENST00000489212 RASEFQ8IZ41 740 aa24.64■■□□□ 1.54
LIME1-207ENST00000489212 RGS22Q8NE09 1264 aa24.64■■□□□ 1.54
LIME1-207ENST00000489212 MTA3Q9BTC8 594 aa24.64■■□□□ 1.54
LIME1-207ENST00000489212 MYL10Q9BUA6 226 aa24.64■■□□□ 1.54
LIME1-207ENST00000489212 PRO3102Q9H379 93 aa24.64■■□□□ 1.54
LIME1-207ENST00000489212 PDGFCQ9NRA1 345 aa24.64■■□□□ 1.54
LIME1-207ENST00000489212 ADD3Q9UEY8 706 aaKnown RBP24.64■■□□□ 1.54
LIME1-207ENST00000489212 CYTH3O43739 400 aa24.63■■□□□ 1.53
LIME1-207ENST00000489212 PTGS1P23219 599 aa24.63■■□□□ 1.53
LIME1-207ENST00000489212 CCSAPQ6IQ19 270 aaPredicted RBP24.63■■□□□ 1.53
LIME1-207ENST00000489212 ZNF654Q8IZM8 581 aa24.63■■□□□ 1.53
LIME1-207ENST00000489212 LRRC2Q9BYS8 371 aa24.63■■□□□ 1.53
LIME1-207ENST00000489212 UPF3AQ9H1J1 476 aaKnown RBP24.63■■□□□ 1.53
LIME1-207ENST00000489212 RIOX1Q9H6W3 641 aa24.63■■□□□ 1.53
LIME1-207ENST00000489212 PPP4R2Q9NY27 417 aa24.63■■□□□ 1.53
LIME1-207ENST00000489212 ZBTB5O15062 677 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms