RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 TSEN34Q9BSV6 310 aaKnown RBP27.43■■□□□ 1.98
C9orf3-215ENST00000478473 FXR1P51114 621 aaKnown RBP eCLIP27.42■■□□□ 1.98
C9orf3-215ENST00000478473 TRDNQ13061 729 aa27.42■■□□□ 1.98
C9orf3-215ENST00000478473 CCSAPQ6IQ19 270 aaPredicted RBP27.42■■□□□ 1.98
C9orf3-215ENST00000478473 SLC39A5Q6ZMH5 540 aa27.42■■□□□ 1.98
C9orf3-215ENST00000478473 RGS22Q8NE09 1264 aa27.42■■□□□ 1.98
C9orf3-215ENST00000478473 MCM3APO60318 1980 aa27.42■■□□□ 1.98
C9orf3-215ENST00000478473 NFIBO00712 420 aa27.41■■□□□ 1.98
C9orf3-215ENST00000478473 PGK1P00558 417 aa27.41■■□□□ 1.98
C9orf3-215ENST00000478473 GOLGA8HP0CJ92 632 aa27.41■■□□□ 1.98
C9orf3-215ENST00000478473 CST5P28325 142 aaPredicted RBP27.41■■□□□ 1.98
C9orf3-215ENST00000478473 CCDC144BQ3MJ40 725 aa27.41■■□□□ 1.98
C9orf3-215ENST00000478473 IFIT1BQ5T764 474 aaKnown RBP27.41■■□□□ 1.98
C9orf3-215ENST00000478473 UPF3AQ9H1J1 476 aaKnown RBP27.41■■□□□ 1.98
C9orf3-215ENST00000478473 ZHX1Q9UKY1 873 aaPredicted RBP27.41■■□□□ 1.98
C9orf3-215ENST00000478473 ZMYND8Q9ULU4 1186 aaPredicted RBP27.41■■□□□ 1.98
C9orf3-215ENST00000478473 TAF6LQ9Y6J9 622 aa27.41■■□□□ 1.98
C9orf3-215ENST00000478473 LCTP09848 1927 aa27.41■■□□□ 1.98
C9orf3-215ENST00000478473 SYNRGQ9UMZ2 1314 aa27.41■■□□□ 1.98
C9orf3-215ENST00000478473 E7EWF7 191 aa27.4■■□□□ 1.98
C9orf3-215ENST00000478473 ADCY6O43306 1168 aa27.4■■□□□ 1.98
C9orf3-215ENST00000478473 ADCYAP1R1P41586 468 aa27.4■■□□□ 1.98
C9orf3-215ENST00000478473 PARP1P09874 1014 aaKnown RBP27.39■■□□□ 1.98
C9orf3-215ENST00000478473 GJA9P57773 515 aa27.39■■□□□ 1.98
C9orf3-215ENST00000478473 BAATQ14032 418 aaPredicted RBP27.39■■□□□ 1.98
C9orf3-215ENST00000478473 NSMFQ6X4W1 530 aa27.39■■□□□ 1.98
C9orf3-215ENST00000478473 STOX1Q6ZVD7 989 aa27.39■■□□□ 1.98
C9orf3-215ENST00000478473 NCOA7Q8NI08 942 aa27.39■■□□□ 1.98
C9orf3-215ENST00000478473 LENG1Q96BZ8 264 aaPredicted RBP27.39■■□□□ 1.98
C9orf3-215ENST00000478473 ESYT1Q9BSJ8 1104 aa27.39■■□□□ 1.98
C9orf3-215ENST00000478473 UBA5Q9GZZ9 404 aa27.39■■□□□ 1.98
C9orf3-215ENST00000478473 LSG1Q9H089 658 aaKnown RBP27.39■■□□□ 1.98
C9orf3-215ENST00000478473 ADD3Q9UEY8 706 aaKnown RBP27.39■■□□□ 1.98
C9orf3-215ENST00000478473 RBM8AQ9Y5S9 174 aaKnown RBP27.39■■□□□ 1.98
C9orf3-215ENST00000478473 RTP1P59025 263 aa27.38■■□□□ 1.97
C9orf3-215ENST00000478473 ADGRF4Q8IZF3 695 aa27.38■■□□□ 1.97
C9orf3-215ENST00000478473 MOXD2PA6NHM9 499 aa27.37■■□□□ 1.97
C9orf3-215ENST00000478473 LRRC37A2A6NM11 1700 aa27.37■■□□□ 1.97
C9orf3-215ENST00000478473 ATN1P54259 1190 aaPredicted RBP27.37■■□□□ 1.97
C9orf3-215ENST00000478473 MTMR8Q96EF0 704 aa27.37■■□□□ 1.97
C9orf3-215ENST00000478473 MTA3Q9BTC8 594 aa27.37■■□□□ 1.97
C9orf3-215ENST00000478473 CPVLQ9H3G5 476 aa27.37■■□□□ 1.97
C9orf3-215ENST00000478473 PALM3A6NDB9 673 aaPredicted RBP27.36■■□□□ 1.97
C9orf3-215ENST00000478473 SYN1P17600 705 aa27.36■■□□□ 1.97
C9orf3-215ENST00000478473 CDC37Q16543 378 aaPredicted RBP27.36■■□□□ 1.97
C9orf3-215ENST00000478473 RNF207Q6ZRF8 634 aa27.36■■□□□ 1.97
C9orf3-215ENST00000478473 MB21D2Q8IYB1 491 aaPredicted RBP27.36■■□□□ 1.97
C9orf3-215ENST00000478473 JMJD4Q9H9V9 463 aa27.36■■□□□ 1.97
C9orf3-215ENST00000478473 VTA1Q9NP79 307 aa27.36■■□□□ 1.97
C9orf3-215ENST00000478473 GNEQ9Y223 722 aaKnown RBP27.36■■□□□ 1.97
C9orf3-215ENST00000478473 CTAGE5O15320 804 aa27.35■■□□□ 1.97
C9orf3-215ENST00000478473 MAGEA10P43363 369 aaPredicted RBP27.35■■□□□ 1.97
C9orf3-215ENST00000478473 ALDH5A1P51649 535 aaPredicted RBP27.35■■□□□ 1.97
C9orf3-215ENST00000478473 ACLYP53396 1101 aa27.35■■□□□ 1.97
C9orf3-215ENST00000478473 RPS6P62753 249 aaKnown RBP27.35■■□□□ 1.97
C9orf3-215ENST00000478473 IQSEC1Q6DN90 963 aa27.35■■□□□ 1.97
C9orf3-215ENST00000478473 TAPT1Q6NXT6 567 aa27.35■■□□□ 1.97
C9orf3-215ENST00000478473 KIAA1211Q6ZU35 1233 aa27.35■■□□□ 1.97
C9orf3-215ENST00000478473 RALYLQ86SE5 291 aaKnown RBP27.35■■□□□ 1.97
C9orf3-215ENST00000478473 DNERQ8NFT8 737 aa27.35■■□□□ 1.97
C9orf3-215ENST00000478473 PURBQ96QR8 312 aaKnown RBP27.35■■□□□ 1.97
C9orf3-215ENST00000478473 MAD2L2Q9UI95 211 aa27.35■■□□□ 1.97
C9orf3-215ENST00000478473 Q9Y3F1 56 aa27.35■■□□□ 1.97
C9orf3-215ENST00000478473 A0A1W2PQ45 241 aaPredicted RBP27.34■■□□□ 1.97
C9orf3-215ENST00000478473 A0A1W2PQY0 241 aa27.34■■□□□ 1.97
C9orf3-215ENST00000478473 EDNRBP24530 442 aa27.34■■□□□ 1.97
C9orf3-215ENST00000478473 ANTXR2P58335 489 aa27.34■■□□□ 1.97
C9orf3-215ENST00000478473 TROAPQ12815 778 aa27.34■■□□□ 1.97
C9orf3-215ENST00000478473 NECTIN1Q15223 517 aa27.34■■□□□ 1.97
C9orf3-215ENST00000478473 SLC30A10Q6XR72 485 aa27.34■■□□□ 1.97
C9orf3-215ENST00000478473 STAG2Q8N3U4 1231 aa27.34■■□□□ 1.97
C9orf3-215ENST00000478473 IGDCC4Q8TDY8 1250 aa27.34■■□□□ 1.97
C9orf3-215ENST00000478473 ABCB11O95342 1321 aa27.34■■□□□ 1.97
C9orf3-215ENST00000478473 IFIT3O14879 490 aaKnown RBP27.33■■□□□ 1.97
C9orf3-215ENST00000478473 TNFAIP2Q03169 654 aa27.33■■□□□ 1.97
C9orf3-215ENST00000478473 PCSK9Q8NBP7 692 aaKnown RBP27.33■■□□□ 1.97
C9orf3-215ENST00000478473 FERMT2Q96AC1 680 aa27.33■■□□□ 1.97
C9orf3-215ENST00000478473 SPC25Q9HBM1 224 aa27.33■■□□□ 1.97
C9orf3-215ENST00000478473 LAMA3Q16787 3333 aa27.33■■□□□ 1.97
C9orf3-215ENST00000478473 RBM47A0AV96 593 aaKnown RBP27.32■■□□□ 1.96
C9orf3-215ENST00000478473 PTPDC1A2A3K4 754 aa27.32■■□□□ 1.96
C9orf3-215ENST00000478473 MYADML2A6NDP7 307 aa27.32■■□□□ 1.96
C9orf3-215ENST00000478473 KLRF2D3W0D1 207 aa27.32■■□□□ 1.96
C9orf3-215ENST00000478473 MYCNP04198 464 aaPredicted RBP27.32■■□□□ 1.96
C9orf3-215ENST00000478473 GHRHRQ02643 423 aa27.32■■□□□ 1.96
C9orf3-215ENST00000478473 GRM4Q14833 912 aa27.32■■□□□ 1.96
C9orf3-215ENST00000478473 SART3Q15020 963 aaKnown RBP27.32■■□□□ 1.96
C9orf3-215ENST00000478473 KCNA10Q16322 511 aa27.32■■□□□ 1.96
C9orf3-215ENST00000478473 QRICH1Q2TAL8 776 aa27.32■■□□□ 1.96
C9orf3-215ENST00000478473 TRIM60Q495X7 471 aa27.32■■□□□ 1.96
C9orf3-215ENST00000478473 NUP133Q8WUM0 1156 aa27.32■■□□□ 1.96
C9orf3-215ENST00000478473 ELP1O95163 1332 aa27.32■■□□□ 1.96
C9orf3-215ENST00000478473 C11orf97A0A1B0GVM6 126 aaPredicted RBP27.31■■□□□ 1.96
C9orf3-215ENST00000478473 ERICH2A1L162 156 aa27.31■■□□□ 1.96
C9orf3-215ENST00000478473 ANKRD33Q7Z3H0 272 aa27.31■■□□□ 1.96
C9orf3-215ENST00000478473 SKAP1Q86WV1 359 aa27.31■■□□□ 1.96
C9orf3-215ENST00000478473 TOX2Q96NM4 488 aa27.31■■□□□ 1.96
C9orf3-215ENST00000478473 MAP3K14Q99558 947 aa27.31■■□□□ 1.96
C9orf3-215ENST00000478473 RIOX1Q9H6W3 641 aa27.31■■□□□ 1.96
C9orf3-215ENST00000478473 SENP2Q9HC62 589 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms