RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 SNX21Q969T3 373 aa17.11■□□□□ 0.33
COL9A3-209ENST00000469852 TRIM47Q96LD4 638 aa17.11■□□□□ 0.33
COL9A3-209ENST00000469852 AIFM3Q96NN9 605 aa17.11■□□□□ 0.33
COL9A3-209ENST00000469852 TRERF1Q96PN7 1200 aa17.11■□□□□ 0.33
COL9A3-209ENST00000469852 AMNQ9BXJ7 453 aa17.11■□□□□ 0.33
COL9A3-209ENST00000469852 RNF26Q9BY78 433 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-209ENST00000469852 RNF146Q9NTX7 359 aa17.11■□□□□ 0.33
COL9A3-209ENST00000469852 LCTP09848 1927 aa17.1■□□□□ 0.33
COL9A3-209ENST00000469852 NFIBO00712 420 aa17.1■□□□□ 0.33
COL9A3-209ENST00000469852 OPLAHO14841 1288 aa17.1■□□□□ 0.33
COL9A3-209ENST00000469852 CCNA1P78396 465 aa17.1■□□□□ 0.33
COL9A3-209ENST00000469852 SSRP1Q08945 709 aaKnown RBP17.1■□□□□ 0.33
COL9A3-209ENST00000469852 WDR78Q5VTH9 848 aa17.1■□□□□ 0.33
COL9A3-209ENST00000469852 GPR142Q7Z601 462 aa17.1■□□□□ 0.33
COL9A3-209ENST00000469852 SHCBP1Q8NEM2 672 aa17.1■□□□□ 0.33
COL9A3-209ENST00000469852 CLEC4DQ8WXI8 215 aa17.1■□□□□ 0.33
COL9A3-209ENST00000469852 SEC63Q9UGP8 760 aaKnown RBP17.1■□□□□ 0.33
COL9A3-209ENST00000469852 PCDHA1Q9Y5I3 950 aa17.1■□□□□ 0.33
COL9A3-209ENST00000469852 ZNFX1Q9P2E3 1918 aaKnown RBP17.09■□□□□ 0.33
COL9A3-209ENST00000469852 K7ELQ4 463 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-209ENST00000469852 SLC25A27O95847 323 aa17.09■□□□□ 0.33
COL9A3-209ENST00000469852 PSMC4P43686 418 aa17.09■□□□□ 0.33
COL9A3-209ENST00000469852 PFKFB3Q16875 520 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-209ENST00000469852 HEATR3Q7Z4Q2 680 aa17.09■□□□□ 0.33
COL9A3-209ENST00000469852 SMARCC2Q8TAQ2 1214 aa17.09■□□□□ 0.33
COL9A3-209ENST00000469852 TBC1D5Q92609 795 aa17.09■□□□□ 0.33
COL9A3-209ENST00000469852 DDX11Q96FC9 970 aa17.09■□□□□ 0.33
COL9A3-209ENST00000469852 ABCB11O95342 1321 aa17.08■□□□□ 0.32
COL9A3-209ENST00000469852 STK36Q9NRP7 1315 aa17.08■□□□□ 0.32
COL9A3-209ENST00000469852 STXBP3O00186 592 aa17.08■□□□□ 0.32
COL9A3-209ENST00000469852 SCG2P13521 617 aa17.08■□□□□ 0.32
COL9A3-209ENST00000469852 MAPK4P31152 587 aa17.08■□□□□ 0.32
COL9A3-209ENST00000469852 CUL4AQ13619 759 aa17.08■□□□□ 0.32
COL9A3-209ENST00000469852 CPLX2Q6PUV4 134 aaKnown RBP17.08■□□□□ 0.32
COL9A3-209ENST00000469852 PLEKHH3Q7Z736 793 aa17.08■□□□□ 0.32
COL9A3-209ENST00000469852 MROH8Q9H579 483 aa17.08■□□□□ 0.32
COL9A3-209ENST00000469852 ACAD9Q9H845 621 aa17.08■□□□□ 0.32
COL9A3-209ENST00000469852 ZNF236Q9UL36 1845 aa17.07■□□□□ 0.32
COL9A3-209ENST00000469852 TNPO2O14787 897 aaKnown RBP17.07■□□□□ 0.32
COL9A3-209ENST00000469852 ADAMTS3O15072 1205 aa17.07■□□□□ 0.32
COL9A3-209ENST00000469852 CDKL5O76039 1030 aa17.07■□□□□ 0.32
COL9A3-209ENST00000469852 FCGRTP55899 365 aa17.07■□□□□ 0.32
COL9A3-209ENST00000469852 TKFCQ3LXA3 575 aa17.07■□□□□ 0.32
COL9A3-209ENST00000469852 CCAR1Q8IX12 1150 aaKnown RBP17.07■□□□□ 0.32
COL9A3-209ENST00000469852 TRIM22Q8IYM9 498 aa17.07■□□□□ 0.32
COL9A3-209ENST00000469852 CHST13Q8NET6 341 aa17.07■□□□□ 0.32
COL9A3-209ENST00000469852 A1CFQ9NQ94 594 aaKnown RBP17.07■□□□□ 0.32
COL9A3-209ENST00000469852 GJB4Q9NTQ9 266 aa17.07■□□□□ 0.32
COL9A3-209ENST00000469852 ORC3Q9UBD5 711 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-209ENST00000469852 GABRQQ9UN88 632 aa17.07■□□□□ 0.32
COL9A3-209ENST00000469852 DEXIO95424 95 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 SLC34A2O95436 690 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 PTPREP23469 700 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 COPB2P35606 906 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 AKAP17AQ02040 695 aaKnown RBP17.06■□□□□ 0.32
COL9A3-209ENST00000469852 MORN1Q5T089 497 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 NSMFQ6X4W1 530 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 SLC30A10Q6XR72 485 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.06■□□□□ 0.32
COL9A3-209ENST00000469852 HSCBQ8IWL3 235 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 ERO1AQ96HE7 468 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 PURBQ96QR8 312 aaKnown RBP17.06■□□□□ 0.32
COL9A3-209ENST00000469852 LLPHQ9BRT6 129 aaKnown RBP17.06■□□□□ 0.32
COL9A3-209ENST00000469852 BARHL2Q9NY43 387 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 VPS54Q9P1Q0 977 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 GJD2Q9UKL4 321 aa17.06■□□□□ 0.32
COL9A3-209ENST00000469852 PLXNA1Q9UIW2 1896 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 TNRC18O15417 2968 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-209ENST00000469852 PGK2P07205 417 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 ADORA2AP29274 412 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 FOSBP53539 338 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 NAPAP54920 295 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 PRKCZQ05513 592 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 GRB14Q14449 540 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 KIF22Q14807 665 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 MMP19Q99542 508 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 CWC22Q9HCG8 908 aaKnown RBP17.05■□□□□ 0.32
COL9A3-209ENST00000469852 TSHZ2Q9NRE2 1034 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 FOXD4L1Q9NU39 408 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 CYP39A1Q9NYL5 469 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 RBM27Q9P2N5 1060 aaKnown RBP17.05■□□□□ 0.32
COL9A3-209ENST00000469852 FBXO40Q9UH90 709 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 PNMA2Q9UL42 364 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 MRPL11Q9Y3B7 192 aaKnown RBP17.05■□□□□ 0.32
COL9A3-209ENST00000469852 HTTP42858 3142 aa17.05■□□□□ 0.32
COL9A3-209ENST00000469852 COBLO75128 1261 aa17.04■□□□□ 0.32
COL9A3-209ENST00000469852 FCER1AP12319 257 aa17.04■□□□□ 0.32
COL9A3-209ENST00000469852 CNTN2Q02246 1040 aa17.04■□□□□ 0.32
COL9A3-209ENST00000469852 BAATQ14032 418 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-209ENST00000469852 OTOP1Q7RTM1 612 aa17.04■□□□□ 0.32
COL9A3-209ENST00000469852 ANKRD35Q8N283 1001 aa17.04■□□□□ 0.32
COL9A3-209ENST00000469852 USP6NLQ92738 828 aa17.04■□□□□ 0.32
COL9A3-209ENST00000469852 FGD4Q96M96 766 aa17.04■□□□□ 0.32
COL9A3-209ENST00000469852 ALG1Q9BT22 464 aa17.04■□□□□ 0.32
COL9A3-209ENST00000469852 COL20A1Q9P218 1284 aa17.04■□□□□ 0.32
COL9A3-209ENST00000469852 IVNS1ABPQ9Y6Y0 642 aa17.04■□□□□ 0.32
COL9A3-209ENST00000469852 ASTN1O14525 1302 aa17.03■□□□□ 0.32
COL9A3-209ENST00000469852 DNAJC25-GNG10A0A024R161 153 aa17.03■□□□□ 0.32
COL9A3-209ENST00000469852 SLC15A5A6NIM6 579 aa17.03■□□□□ 0.32
COL9A3-209ENST00000469852 hCG_1984214I3L0E3 225 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms