RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 FAM133AQ8N9E0 248 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 RANBP17Q9H2T7 1088 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 SYNRGQ9UMZ2 1314 aa21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 SOX1O00570 391 aaPredicted RBP21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 EPB41L2O43491 1005 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 KDM4AO75164 1064 aa21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 SNX17Q15036 470 aa21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 CCDC144BQ3MJ40 725 aa21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 C1orf53Q5VUE5 145 aa21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 DGKHQ86XP1 1220 aa21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 LRCH3Q96II8 777 aa21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 TSEN34Q9BSV6 310 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 CYP39A1Q9NYL5 469 aa21.08■□□□□ 0.97
SQSTM1-204ENST00000453046 A0A1W2PQ45 241 aaPredicted RBP21.07■□□□□ 0.96
SQSTM1-204ENST00000453046 A0A1W2PQY0 241 aa21.07■□□□□ 0.96
SQSTM1-204ENST00000453046 C6orf222P0C671 652 aaPredicted RBP21.07■□□□□ 0.96
SQSTM1-204ENST00000453046 NOL8Q76FK4 1167 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-204ENST00000453046 NUP133Q8WUM0 1156 aa21.07■□□□□ 0.96
SQSTM1-204ENST00000453046 STARD7Q9NQZ5 370 aa21.07■□□□□ 0.96
SQSTM1-204ENST00000453046 SOWAHBA6NEL2 793 aa21.06■□□□□ 0.96
SQSTM1-204ENST00000453046 MOXD2PA6NHM9 499 aa21.06■□□□□ 0.96
SQSTM1-204ENST00000453046 ACLYP53396 1101 aa21.06■□□□□ 0.96
SQSTM1-204ENST00000453046 TLE2Q04725 743 aa21.06■□□□□ 0.96
SQSTM1-204ENST00000453046 ZNF543Q08ER8 600 aa21.06■□□□□ 0.96
SQSTM1-204ENST00000453046 KCNA10Q16322 511 aa21.06■□□□□ 0.96
SQSTM1-204ENST00000453046 LRIT3Q3SXY7 679 aa21.06■□□□□ 0.96
SQSTM1-204ENST00000453046 KAT14Q9H8E8 782 aa21.06■□□□□ 0.96
SQSTM1-204ENST00000453046 PNMA2Q9UL42 364 aa21.06■□□□□ 0.96
SQSTM1-204ENST00000453046 LAMA3Q16787 3333 aa21.06■□□□□ 0.96
SQSTM1-204ENST00000453046 B4E1Z4 1266 aa21.05■□□□□ 0.96
SQSTM1-204ENST00000453046 GPATCH4Q5T3I0 446 aaKnown RBP21.05■□□□□ 0.96
SQSTM1-204ENST00000453046 PCSK9Q8NBP7 692 aaKnown RBP21.05■□□□□ 0.96
SQSTM1-204ENST00000453046 KLHDC9Q8NEP7 349 aa21.05■□□□□ 0.96
SQSTM1-204ENST00000453046 KRT23Q9C075 422 aa21.05■□□□□ 0.96
SQSTM1-204ENST00000453046 PTPDC1A2A3K4 754 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 PQBP1O60828 265 aaKnown RBP21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 GOLGA8HP0CJ92 632 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 SNHG28P0DPA3 235 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 TNFAIP2Q03169 654 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 PNMA1Q8ND90 353 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 VTI1AQ96AJ9 217 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 GLT1D1Q96MS3 346 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 TBC1D32Q96NH3 1257 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 ZSCAN10Q96SZ4 725 aaPredicted RBP21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 IL25Q9H293 177 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 CNNM2Q9H8M5 875 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 PDLIM7Q9NR12 457 aa21.04■□□□□ 0.96
SQSTM1-204ENST00000453046 MCM3APO60318 1980 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 MYADML2A6NDP7 307 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 ADCY6O43306 1168 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 CLTBP09497 229 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 CST5P28325 142 aaPredicted RBP21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 GJA9P57773 515 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 BAATQ14032 418 aaPredicted RBP21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 GNASQ5JWF2 1037 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 EEPD1Q7L9B9 569 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 UBAC1Q9BSL1 405 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 KATNBL1Q9H079 304 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 ANO2Q9NQ90 1003 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 ZSWIM5Q9P217 1185 aa21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 ADD3Q9UEY8 706 aaKnown RBP21.03■□□□□ 0.96
SQSTM1-204ENST00000453046 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 TRIM43BA6NCK2 446 aa21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 NFIBO00712 420 aa21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 ASGR1P07306 291 aa21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 IRX5P78411 483 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 CCSAPQ6IQ19 270 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 KIAA1211Q6ZU35 1233 aa21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 SH3RF1Q7Z6J0 888 aa21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 BADQ92934 168 aa21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 TRIM43Q96BQ3 446 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 UBA5Q9GZZ9 404 aa21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 UPF3AQ9H1J1 476 aaKnown RBP21.02■□□□□ 0.96
SQSTM1-204ENST00000453046 TNKSO95271 1327 aa21.02■□□□□ 0.95
SQSTM1-204ENST00000453046 DCDC2CA8MYV0 355 aa21.01■□□□□ 0.95
SQSTM1-204ENST00000453046 FBXO16Q8IX29 292 aaPredicted RBP21.01■□□□□ 0.95
SQSTM1-204ENST00000453046 PURBQ96QR8 312 aaKnown RBP21.01■□□□□ 0.95
SQSTM1-204ENST00000453046 C22orf23Q9BZE7 217 aa21.01■□□□□ 0.95
SQSTM1-204ENST00000453046 AP5M1Q9H0R1 490 aa21.01■□□□□ 0.95
SQSTM1-204ENST00000453046 TMEM39AQ9NV64 488 aa21.01■□□□□ 0.95
SQSTM1-204ENST00000453046 DDX49Q9Y6V7 483 aaKnown RBP21.01■□□□□ 0.95
SQSTM1-204ENST00000453046 ASTN1O14525 1302 aa21.01■□□□□ 0.95
SQSTM1-204ENST00000453046 LAMA4Q16363 1823 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 RAG1P15918 1043 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 CALML3P27482 149 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 RBM25P49756 843 aaKnown RBP21■□□□□ 0.95
SQSTM1-204ENST00000453046 TRDNQ13061 729 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 USH1GQ495M9 461 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 GPR153Q6NV75 609 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 RNF207Q6ZRF8 634 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 ENAHQ8N8S7 591 aaPredicted RBP21■□□□□ 0.95
SQSTM1-204ENST00000453046 ANKS1AQ92625 1134 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 USP26Q9BXU7 913 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 LSG1Q9H089 658 aaKnown RBP21■□□□□ 0.95
SQSTM1-204ENST00000453046 CPVLQ9H3G5 476 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 VTA1Q9NP79 307 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 ELP1O95163 1332 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 WDR19Q8NEZ3 1342 aa21■□□□□ 0.95
SQSTM1-204ENST00000453046 DHX16O60231 1041 aaKnown RBP20.99■□□□□ 0.95
SQSTM1-204ENST00000453046 ALDH5A1P51649 535 aaPredicted RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms