RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 RGS22Q8NE09 1264 aa16.7■□□□□ 0.26
COL3A1-203ENST00000450867 CLEC4DQ8WXI8 215 aa16.7■□□□□ 0.26
COL3A1-203ENST00000450867 PAK6Q9NQU5 681 aaPredicted RBP16.7■□□□□ 0.26
COL3A1-203ENST00000450867 CCDC85CA6NKD9 419 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 PGK2P07205 417 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 CCL5P13501 91 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 CAPN2P17655 700 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 GHRHRQ02643 423 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 TRIM32Q13049 653 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 PPP2R5BQ15173 497 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 MTFR1Q15390 333 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 MAMDC4Q6UXC1 1216 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 Q6ZUG5 572 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 ANKRD35Q8N283 1001 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 NUP133Q8WUM0 1156 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 FGD4Q96M96 766 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 ALDH8A1Q9H2A2 487 aaPredicted RBP16.69■□□□□ 0.26
COL3A1-203ENST00000450867 HOMER2Q9NSB8 354 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 CYP39A1Q9NYL5 469 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 CYP46A1Q9Y6A2 500 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 ABCB11O95342 1321 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 RPTORQ8N122 1335 aa16.69■□□□□ 0.26
COL3A1-203ENST00000450867 KLF18A0A0U1RQI7 1052 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 ZBTB43O43298 467 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 PPP1R11O60927 126 aaPredicted RBP16.68■□□□□ 0.26
COL3A1-203ENST00000450867 GJB1P08034 283 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 CACNB2Q08289 660 aaPredicted RBP16.68■□□□□ 0.26
COL3A1-203ENST00000450867 TRAF1Q13077 416 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 MFSD14CQ5VZR4 134 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 SYNE3Q6ZMZ3 975 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 TMTC3Q6ZXV5 915 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 MICU3Q86XE3 530 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 FBXO11Q86XK2 927 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 BRF1Q92994 677 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 DDX11Q96FC9 970 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 AMNQ9BXJ7 453 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 UNC93B1Q9H1C4 597 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 RBM28Q9NW13 759 aaKnown RBP16.68■□□□□ 0.26
COL3A1-203ENST00000450867 BIN2Q9UBW5 565 aaPredicted RBP16.68■□□□□ 0.26
COL3A1-203ENST00000450867 NRBP1Q9UHY1 535 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 SYNGAP1Q96PV0 1343 aa16.68■□□□□ 0.26
COL3A1-203ENST00000450867 LOC102724159A0A0B4J2E5 919 aa16.67■□□□□ 0.26
COL3A1-203ENST00000450867 PNMA6FA0A0J9YX94 578 aa16.67■□□□□ 0.26
COL3A1-203ENST00000450867 NFIBO00712 420 aa16.67■□□□□ 0.26
COL3A1-203ENST00000450867 DHX16O60231 1041 aaKnown RBP16.67■□□□□ 0.26
COL3A1-203ENST00000450867 PLEKHA8P1O95397 391 aa16.67■□□□□ 0.26
COL3A1-203ENST00000450867 PRKAR2AP13861 404 aaKnown RBP16.67■□□□□ 0.26
COL3A1-203ENST00000450867 TAL1P17542 331 aaPredicted RBP16.67■□□□□ 0.26
COL3A1-203ENST00000450867 RXRAP19793 462 aa16.67■□□□□ 0.26
COL3A1-203ENST00000450867 SLC4A3P48751 1232 aa16.67■□□□□ 0.26
COL3A1-203ENST00000450867 FUT2Q10981 343 aa16.67■□□□□ 0.26
COL3A1-203ENST00000450867 TOB2Q14106 344 aaPredicted RBP16.67■□□□□ 0.26
COL3A1-203ENST00000450867 PWP2Q15269 919 aaKnown RBP16.67■□□□□ 0.26
COL3A1-203ENST00000450867 SRBD1Q8N5C6 995 aaKnown RBP16.67■□□□□ 0.26
COL3A1-203ENST00000450867 PIGSQ96S52 555 aa16.67■□□□□ 0.26
COL3A1-203ENST00000450867 TINF2Q9BSI4 451 aa16.67■□□□□ 0.26
COL3A1-203ENST00000450867 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.67■□□□□ 0.26
COL3A1-203ENST00000450867 VAT1LQ9HCJ6 419 aa16.67■□□□□ 0.26
COL3A1-203ENST00000450867 FAM217BQ9NTX9 383 aaPredicted RBP16.67■□□□□ 0.26
COL3A1-203ENST00000450867 POTEB2H3BUK9 544 aa16.66■□□□□ 0.26
COL3A1-203ENST00000450867 CYBAP13498 195 aa16.66■□□□□ 0.26
COL3A1-203ENST00000450867 RGS19P49795 217 aa16.66■□□□□ 0.26
COL3A1-203ENST00000450867 APOBRQ0VD83 1088 aa16.66■□□□□ 0.26
COL3A1-203ENST00000450867 TMEM106CQ9BVX2 250 aa16.66■□□□□ 0.26
COL3A1-203ENST00000450867 UPF3BQ9BZI7 483 aaKnown RBP16.66■□□□□ 0.26
COL3A1-203ENST00000450867 HMX1Q9NP08 348 aaPredicted RBP16.66■□□□□ 0.26
COL3A1-203ENST00000450867 KIAA1217Q5T5P2 1943 aa16.66■□□□□ 0.26
COL3A1-203ENST00000450867 ASTN1O14525 1302 aa16.66■□□□□ 0.26
COL3A1-203ENST00000450867 OPLAHO14841 1288 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 CYP2C19P33261 490 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 GJA8P48165 433 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 FGD1P98174 961 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 CNTN2Q02246 1040 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 RTN1Q16799 776 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 USH1GQ495M9 461 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 SAMD3Q8N6K7 520 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 MORC4Q8TE76 937 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 CRISPLD2Q9H0B8 497 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 RNF208Q9H0X6 261 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 MRPL11Q9Y3B7 192 aaKnown RBP16.65■□□□□ 0.26
COL3A1-203ENST00000450867 CNTNAP5Q8WYK1 1306 aa16.65■□□□□ 0.26
COL3A1-203ENST00000450867 POTEFA5A3E0 1075 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 SOWAHBA6NEL2 793 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 GOLGA8AA7E2F4 631 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 GOLGA8BA8MQT2 603 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 SOX10P56693 466 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 BAATQ14032 418 aaPredicted RBP16.64■□□□□ 0.25
COL3A1-203ENST00000450867 NSMFQ6X4W1 530 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 RAB11FIP4Q86YS3 637 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 CCDC144CPQ8IYA2 1237 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 TRPV1Q8NER1 839 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 SHISA4Q96DD7 197 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 RRP36Q96EU6 259 aaKnown RBP16.64■□□□□ 0.25
COL3A1-203ENST00000450867 MAP3K20Q9NYL2 800 aaKnown RBP16.64■□□□□ 0.25
COL3A1-203ENST00000450867 PCDHA1Q9Y5I3 950 aa16.64■□□□□ 0.25
COL3A1-203ENST00000450867 CCDC196A0A1B0GTZ2 297 aa16.63■□□□□ 0.25
COL3A1-203ENST00000450867 SGPL1O95470 568 aa16.63■□□□□ 0.25
COL3A1-203ENST00000450867 PDIA3P30101 505 aaKnown RBP16.63■□□□□ 0.25
COL3A1-203ENST00000450867 CDC27P30260 824 aa16.63■□□□□ 0.25
COL3A1-203ENST00000450867 CCND3P30281 292 aaPredicted RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms